RNA id: TU2185095


Basic Information

Item Value
RNA id TU2185095
length 295
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1910630
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19474289 ~ 19474583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatagcccacccaattttacctacctcatccccatactgtttatgtttatttacttttctgctcttttgcacaccaatatctctacctgtacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcctacctcctcatgccttttgcacacaatgtatatagactctcttttttttctactgtgttattgacttgttaattgtttactccatctgtaactctgtgttgtctgttcacaatgctatgctttatcttggccaggtcgcagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2185068 lncRNA downstream 59986 19414084 ~ 19414303 (-) True G1910604
TU2185065 lncRNA downstream 61830 19412245 ~ 19412459 (-) True G1910601
TU2185051 lncRNA downstream 73522 19400419 ~ 19400767 (-) True G1910588
TU2185049 lncRNA downstream 76899 19397081 ~ 19397390 (-) True LOC118944057
TU2185043 lncRNA downstream 93984 19379969 ~ 19380305 (-) True G1910580
TU2185098 lncRNA upstream 1658 19476241 ~ 19476498 (-) True G1910633
TU2185118 lncRNA upstream 17187 19491770 ~ 19491997 (-) True G1910652
TU2185417 lncRNA upstream 24170 19498753 ~ 19501302 (-) False LOC118944022
TU2185416 lncRNA upstream 24203 19498786 ~ 19502464 (-) True LOC118944022
TU2185463 lncRNA upstream 96278 19570861 ~ 19576495 (-) True G1910931
XR_005039347.1 mRNA downstream 76145 19397354 ~ 19398144 (-) False LOC118944057
XM_021582607.2 mRNA downstream 288517 18971681 ~ 19185772 (-) False LOC110503944
XM_021582600.2 mRNA downstream 660489 18795254 ~ 18813800 (-) True wdr81
XM_021582601.2 mRNA downstream 660543 18795254 ~ 18813746 (-) False wdr81
XM_021582606.2 mRNA downstream 679477 18789219 ~ 18794812 (-) True LOC110503941
XR_005039330.1 mRNA upstream 23979 19498562 ~ 19501080 (-) False LOC118944022
XM_021582610.2 mRNA upstream 31595 19506178 ~ 19515249 (-) False LOC110503947
XM_021582612.2 mRNA upstream 31595 19506178 ~ 19515249 (-) False LOC110503947
XM_021582611.2 mRNA upstream 31595 19506178 ~ 19517866 (-) False LOC110503947
XM_036961809.1 mRNA upstream 31595 19506178 ~ 19517866 (-) True LOC110503947
TU2185002 other downstream 141064 19332841 ~ 19333225 (-) True G1910539
TU2184852 other downstream 312131 19160449 ~ 19162158 (-) True G1910398
TU2184703 other downstream 501059 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other downstream 501059 18968062 ~ 18973230 (-) True LOC110503944
TU2183901 other downstream 1039497 18432024 ~ 18434792 (-) True LOC110503924
TU2185117 other upstream 16134 19490717 ~ 19491608 (-) True G1910651
TU2185535 other upstream 216483 19691066 ~ 19691513 (-) True G1910996
TU2186472 other upstream 986085 20460668 ~ 20461437 (-) True G1911862
TU2187184 other upstream 1498096 20972679 ~ 20976236 (-) True G1912470
TU2188551 other upstream 2389005 21863588 ~ 21864274 (-) True G1913665

Expression Profile