RNA id: TU2186449


Basic Information

Item Value
RNA id TU2186449
length 347
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1911844
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20428223 ~ 20428569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgcacagtgtttcctccgacacattggtgcggctggcttccgggttggatgtgcgctgtgtatCGGAGGGCggatgactttcaaccttcgtctctcccgagcccgtatgggagttgtagcgatgagacaagatagtagctactaaaacaattggataccacgaaattggggagaaaacggggtaaatgaaataaaacataaaaacaaataaataaaaacttagtgtatgtaaacttctgacccactggaagtgTGATACagagaattataagtgaaataatctgtctgtaaacaaatgttggaaaattacttgtgtcatacacagagtagatgtcctaaccgact

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2186346 lncRNA downstream 94569 20315054 ~ 20333654 (-) True LOC110503964
TU2186340 lncRNA downstream 163960 20262810 ~ 20264263 (-) False G1911744
TU2186339 lncRNA downstream 163995 20259377 ~ 20264228 (-) False G1911744
TU2186341 lncRNA downstream 163995 20262810 ~ 20264228 (-) True G1911744
TU2186314 lncRNA downstream 198895 20227628 ~ 20229328 (-) True G1911721
TU2186447 lncRNA upstream 19771 20448340 ~ 20448804 (-) True G1911842
TU2186446 lncRNA upstream 20914 20449483 ~ 20450649 (-) True G1911841
TU2186524 lncRNA upstream 99134 20527703 ~ 20534902 (-) True G1911899
TU2186532 lncRNA upstream 111003 20539572 ~ 20539865 (-) True G1911907
TU2186540 lncRNA upstream 118535 20547104 ~ 20556966 (-) True G1911914
XM_036961386.1 mRNA downstream 23056 20335401 ~ 20405167 (-) False LOC110503964
XR_005039327.1 mRNA downstream 23056 20335403 ~ 20405167 (-) False LOC110503964
XM_036961385.1 mRNA downstream 23056 20335407 ~ 20405167 (-) False LOC110503964
XM_021582650.2 mRNA downstream 23057 20329993 ~ 20405166 (-) False LOC110503964
XM_021582652.2 mRNA downstream 23057 20329993 ~ 20405166 (-) False LOC110503964
XR_005039334.1 mRNA upstream 26767 20455336 ~ 20458492 (-) True LOC110503968
XM_021582661.2 mRNA upstream 54696 20483265 ~ 20501137 (-) False LOC110503970
XM_021582660.2 mRNA upstream 54696 20483265 ~ 20552148 (-) True LOC110503970
XM_021582665.2 mRNA upstream 238312 20666881 ~ 20676630 (-) False LOC110503972
XM_036961245.1 mRNA upstream 242839 20671408 ~ 20676630 (-) True LOC110503972
TU2185535 other downstream 736710 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 936615 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 1094998 19332841 ~ 19333225 (-) True G1910539
TU2184852 other downstream 1266065 19160449 ~ 19162158 (-) True G1910398
TU2184704 other downstream 1454993 18968062 ~ 18973230 (-) True LOC110503944
TU2186472 other upstream 32099 20460668 ~ 20461437 (-) True G1911862
TU2187184 other upstream 544110 20972679 ~ 20976236 (-) True G1912470
TU2188551 other upstream 1435019 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 1442684 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 3323274 23751843 ~ 23752463 (-) True G1915836

Expression Profile