RNA id: TU2186472


Basic Information

Item Value
RNA id TU2186472
length 770
RNA type TUCP
GC content 0.40
exon number 1
gene id G1911862
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20460668 ~ 20461437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaatataacaataataataataataatgttttattaataataaacgttttattattttcatgaaatgctaTTAACATATTACTATGTTGGGACCGCTGAAATAAAGGATAATGAGTGACACCCTAGCGGGTGTCAAAAGGGGAACTTAAATTTGACACCATTTTCTTTTATTCTGTTTTTAAATGAGCTGTTGTTCTCTTTTGACATGAGGGTTGTAAGTTCCTAGGTGGCTGGTAGCCAATCTAGTACATAGTGGGATCGACTGGAGGACATGAAGGTATTTTAAACTTTAACTGTTATATGATTCATTGCTGAATTTTTGTTCACACCCTTGGGGGGGATTGTTGGATCCTGtgttttacattatagccattaccatatatatgattgaatattatctgctgttggcttgtgtggatgtatgtatgtgttatgcaacatagttgacttgaaacattgttaaaagcttcagggccatgggcctttctcatgatggaaaaatacagaagacAGGGCACATTCAGAGCGTGGGGTTGCAGAACAAGtggtcttttgttagataacaggagccaggtgcgagaTAACGGTATGGAGCATGAGCGCATGGATGTTCTTCACAGCAAAAGTTACCTCTATCAACagaagcgccaagaggcggggacccgcctgagcgcctgcaataggctgagcaagtttaaaccacgcccagcctctactgtgataggccaacagacgggttggaactgtctatcacagtataaagaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2186446 lncRNA downstream 10019 20449483 ~ 20450649 (-) True G1911841
TU2186447 lncRNA downstream 11864 20448340 ~ 20448804 (-) True G1911842
TU2186449 lncRNA downstream 32099 20428223 ~ 20428569 (-) True G1911844
TU2186346 lncRNA downstream 127014 20315054 ~ 20333654 (-) True LOC110503964
TU2186340 lncRNA downstream 196405 20262810 ~ 20264263 (-) False G1911744
TU2186524 lncRNA upstream 66266 20527703 ~ 20534902 (-) True G1911899
TU2186532 lncRNA upstream 78135 20539572 ~ 20539865 (-) True G1911907
TU2186540 lncRNA upstream 85667 20547104 ~ 20556966 (-) True G1911914
TU2186575 lncRNA upstream 115496 20576933 ~ 20577218 (-) True G1911949
TU2186661 lncRNA upstream 177289 20638726 ~ 20638954 (-) True G1912018
XR_005039334.1 mRNA downstream 2176 20455336 ~ 20458492 (-) True LOC110503968
XM_036961386.1 mRNA downstream 55501 20335401 ~ 20405167 (-) False LOC110503964
XR_005039327.1 mRNA downstream 55501 20335403 ~ 20405167 (-) False LOC110503964
XM_036961385.1 mRNA downstream 55501 20335407 ~ 20405167 (-) False LOC110503964
XM_021582650.2 mRNA downstream 55502 20329993 ~ 20405166 (-) False LOC110503964
XM_021582661.2 mRNA upstream 21828 20483265 ~ 20501137 (-) False LOC110503970
XM_021582660.2 mRNA upstream 21828 20483265 ~ 20552148 (-) True LOC110503970
XM_021582665.2 mRNA upstream 205444 20666881 ~ 20676630 (-) False LOC110503972
XM_036961245.1 mRNA upstream 209971 20671408 ~ 20676630 (-) True LOC110503972
XM_021582669.2 mRNA upstream 236324 20697761 ~ 20724730 (-) False LOC110503975
TU2185535 other downstream 769155 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 969060 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 1127443 19332841 ~ 19333225 (-) True G1910539
TU2184852 other downstream 1298510 19160449 ~ 19162158 (-) True G1910398
TU2184703 other downstream 1487438 18968062 ~ 18973230 (-) False LOC110503944
TU2187184 other upstream 511242 20972679 ~ 20976236 (-) True G1912470
TU2188551 other upstream 1402151 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 1409816 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 3290406 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 5702028 26163465 ~ 26165245 (-) True LOC110504083

Expression Profile