RNA id: TU2186524



Basic Information


Item Value
RNA id TU2186524
length 374
lncRNA type intronic
GC content 0.51
exon number 2
gene id G1911899
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20527703 ~ 20534902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggtacggcaactgctccgcccacaaccataaggctctccagagggtagtgcggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacatcaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaagaccatcagactgttaaacagccaccactaacattgagtggctgctgccaacacactgacactgactcaactccagccactttaataatgggaattgatgggaaattatgtaaatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2186446 lncRNA downstream 77054 20449483 ~ 20450649 (-) True G1911841
TU2186447 lncRNA downstream 78899 20448340 ~ 20448804 (-) True G1911842
TU2186449 lncRNA downstream 99134 20428223 ~ 20428569 (-) True G1911844
TU2186346 lncRNA downstream 194049 20315054 ~ 20333654 (-) True LOC110503964
TU2186340 lncRNA downstream 263440 20262810 ~ 20264263 (-) False G1911744
TU2186532 lncRNA upstream 4670 20539572 ~ 20539865 (-) True G1911907
TU2186540 lncRNA upstream 12202 20547104 ~ 20556966 (-) True G1911914
TU2186575 lncRNA upstream 42031 20576933 ~ 20577218 (-) True G1911949
TU2186661 lncRNA upstream 103824 20638726 ~ 20638954 (-) True G1912018
TU2186977 lncRNA upstream 117621 20652523 ~ 20653588 (-) True G1912300
XM_021582661.2 mRNA downstream 26566 20483265 ~ 20501137 (-) False LOC110503970
XR_005039334.1 mRNA downstream 69211 20455336 ~ 20458492 (-) True LOC110503968
XM_036961386.1 mRNA downstream 122536 20335401 ~ 20405167 (-) False LOC110503964
XR_005039327.1 mRNA downstream 122536 20335403 ~ 20405167 (-) False LOC110503964
XM_036961385.1 mRNA downstream 122536 20335407 ~ 20405167 (-) False LOC110503964
XM_021582665.2 mRNA upstream 131979 20666881 ~ 20676630 (-) False LOC110503972
XM_036961245.1 mRNA upstream 136506 20671408 ~ 20676630 (-) True LOC110503972
XM_021582669.2 mRNA upstream 162859 20697761 ~ 20724730 (-) False LOC110503975
XM_036962097.1 mRNA upstream 162859 20697761 ~ 20724730 (-) True LOC110503975
XM_036962115.1 mRNA upstream 190006 20724908 ~ 20752164 (-) False LOC110503976
TU2186472 other downstream 66266 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 836190 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 1036095 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 1194478 19332841 ~ 19333225 (-) True G1910539
TU2184852 other downstream 1365545 19160449 ~ 19162158 (-) True G1910398
TU2187184 other upstream 437777 20972679 ~ 20976236 (-) True G1912470
TU2188551 other upstream 1328686 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 1336351 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 3216941 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 5628563 26163465 ~ 26165245 (-) True LOC110504083

Expression Profile