RNA id: TU2187208


Basic Information

Item Value
RNA id TU2187208
length 254
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G1912483
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21007167 ~ 21007641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACAATAATTAGTGAATGAACGTGTCGAAAAGAGATTCCGGGTTCCAGACACTCTCAGCGGCCAATGTACGAAAATAtaccacactACGGGAGTTGACACAGCTGGAGTAGCTTCAGAGCAGCCGCTCTCCCGGACAGAGAGTCAAACACCTTCCTACCCTCTGCCACAACCTCCTCCATACTGAGGCTAATGGTGGATTGTTGCTCACACACTGCTGTCGCACAGGCGAGAACCCTCCCGGTCTTCAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2187183 lncRNA downstream 36609 20968447 ~ 20970558 (-) True G1912469
TU2187168 lncRNA downstream 56950 20948535 ~ 20950217 (-) True G1912454
TU2187141 lncRNA downstream 60000 20945023 ~ 20947167 (-) True G1912439
TU2187164 lncRNA downstream 71220 20934482 ~ 20935947 (-) True LOC110503985
TU2187176 lncRNA downstream 80758 20926170 ~ 20926409 (-) True G1912462
TU2187222 lncRNA upstream 58389 21066030 ~ 21066341 (-) True G1912496
TU2188058 lncRNA upstream 78184 21085825 ~ 21086059 (-) True G1913254
TU2188123 lncRNA upstream 164002 21171643 ~ 21175302 (-) False G1913296
TU2188128 lncRNA upstream 165291 21172932 ~ 21173561 (-) False G1913296
TU2188130 lncRNA upstream 165291 21172932 ~ 21175302 (-) True G1913296
XM_021582701.2 mRNA downstream 45526 20950918 ~ 20961641 (-) True LOC110503987
XM_021582698.2 mRNA downstream 65663 20934474 ~ 20941504 (-) False LOC110503985
XM_036962106.1 mRNA downstream 254993 20724908 ~ 20752174 (-) False LOC110503976
XM_036961321.1 mRNA upstream 22143 21029784 ~ 21064377 (-) False LOC110503988
XM_036961322.1 mRNA upstream 22143 21029784 ~ 21064377 (-) True LOC110503988
XM_021582705.2 mRNA upstream 60005 21067646 ~ 21081164 (-) True LOC110503989
XM_036962162.1 mRNA upstream 81094 21088735 ~ 21111118 (-) False LOC110503992
XM_021582708.2 mRNA upstream 81094 21088735 ~ 21111303 (-) False LOC110503992
TU2187184 other downstream 30931 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 545730 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 1315654 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 1515559 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 1673942 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 855947 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 863612 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 2744202 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 5155824 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 5202775 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile