RNA id: TU2189373



Basic Information


Item Value
RNA id TU2189373
length 280
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1914452
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 22705625 ~ 22705904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGTAGCACGTGAGGTTAACGGAACCTGCCAGTAACCTTTTAAGAGGTCCAACTTAGTTATATAAGTAGCAGCACCAACAGTGTCAATACAGTCGTCCAGTCTGGGTAACGGGAACAAATCTGGCATTGTGACAGAATTTACCTTTCGATAATCTGTACATAACCTGGACGTACCATCAGGTTTAGGAACCAGAATGCAAGGAGAACCATGTCATTCTCCAACAAATATCTCACTTCATCCCTCATTATCTTCTGCTTAGAAGCATTGACACGATATGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2189365 lncRNA downstream 6186 22699231 ~ 22699439 (-) True G1914444
TU2189344 lncRNA downstream 21166 22684235 ~ 22684459 (-) True G1914423
TU2189166 lncRNA downstream 245772 22459225 ~ 22459853 (-) True G1914246
TU2189163 lncRNA downstream 246694 22458000 ~ 22458931 (-) True G1914243
TU2189144 lncRNA downstream 298000 22407290 ~ 22407625 (-) True G1914226
TU2189381 lncRNA upstream 10667 22716571 ~ 22716772 (-) True G1914460
TU2189386 lncRNA upstream 13825 22719729 ~ 22719959 (-) True G1914465
TU2189389 lncRNA upstream 16471 22722375 ~ 22722596 (-) True G1914468
TU2189399 lncRNA upstream 24805 22730709 ~ 22731020 (-) True G1914478
TU2189506 lncRNA upstream 86185 22792089 ~ 22792395 (-) True G1914585
XM_036961435.1 mRNA downstream 29349 22462266 ~ 22676276 (-) False LOC110503369
XM_021582830.2 mRNA upstream 293153 22999057 ~ 23036494 (-) False LOC110504033
XM_021582828.2 mRNA upstream 293153 22999057 ~ 23048741 (-) False LOC110504033
XM_021582829.2 mRNA upstream 293153 22999057 ~ 23048741 (-) False LOC110504033
XM_036961173.1 mRNA upstream 293153 22999057 ~ 23048741 (-) True LOC110504033
XM_021582835.2 mRNA upstream 434063 23139967 ~ 23144967 (-) True LOC110504036
TU2188549 other downstream 833476 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 841351 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 1729389 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2244188 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 3014112 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 1045939 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 3457561 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 3504512 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 4204880 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 4623546 27329450 ~ 27331899 (-) True G1919707

Expression Profile