RNA id: TCONS_00053520


Basic Information

Item Value
RNA id TCONS_00053520
length 674
RNA type processed_transcript
GC content 0.47
exon number 5
gene id XLOC_027159
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11690923 ~ 11730768 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCATGATCTGCATGTcttcttaatcaaacacacctgattcaactCATCAGCTCGTTAGCAGAGACTCCAGGACCTCAAATGATTGTGTGAGACAAAGGAGACGTGCGTGAAATTAACTATCATTTTTGTCATCTGAAGTTAACTTGGCTGGAAAAAATGGACATGAAATAATAAGTAAGGTGCATTACCTGTTTGGTGGAAACCCAGGAAAGTCCAGCTCTCCCAAAATGCGACTGGATGACTTCTGGTCCCTAAAGCTCTGCCGCCCTTCCAAAGAATACCTGCTGCGTCACTGCAAATACCTCATTCGCAAATACAGgtttGAGGAAAAGGCTCAGACCGAGCCCTTGAATGCACTTAAATATCTACAGAATGATCTGTCCCTCACTGTGGACCACACTGATCCTGATGAGACGAAAGAGTTCCAGCTCTTGCCCTCCGCTCTGTTCAAATCCAGCTCAGACTTCATTCCTCTAGGCTTTTCAGATGTGGATCAGACGTACGCCCAGCGCACACAGCTGTTCGACACACTCGTCAATTTCTTCCCCGACAATATGACCCCGCCCAAGGGTAACCTCGTCGACCTCATCACCCTGTAGCCACGCCCACACACACTAGACCTCTCAGACTCCTCCCACTCAAAAACAGAAGTTATTTTTCTACATTTTCCC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-3942 Predicted to be active in cytoplasm. Orthologous to human MKLN1 (muskelin 1).

Ensembl:

ensembl_id ENSDART00000150275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053518 lncRNA upstream 17562 11696054 ~ 11706668 (+) False XLOC_027159
TCONS_00057132 lncRNA upstream 95618 11628170 ~ 11628612 (+) True XLOC_027158
TCONS_00057636 lncRNA upstream 261531 11458108 ~ 11462699 (+) False XLOC_027153
TCONS_00053507 lncRNA upstream 261531 11461307 ~ 11462699 (+) True XLOC_027153
TCONS_00053506 lncRNA upstream 262848 11458108 ~ 11461382 (+) False XLOC_027153
TCONS_00057637 lncRNA downstream 32824 11761954 ~ 11772599 (+) False XLOC_027160
TCONS_00057638 lncRNA downstream 32963 11762093 ~ 11772599 (+) False XLOC_027160
TCONS_00053522 lncRNA downstream 32967 11762097 ~ 11772599 (+) False XLOC_027160
TCONS_00053521 lncRNA downstream 32967 11762097 ~ 11772599 (+) False XLOC_027160
TCONS_00057639 lncRNA downstream 35962 11765092 ~ 11766446 (+) False XLOC_027160
TCONS_00053516 mRNA upstream 17744 11690923 ~ 11706486 (+) False XLOC_027159
TCONS_00053514 mRNA upstream 199342 11483361 ~ 11524888 (+) True XLOC_027156
TCONS_00053513 mRNA upstream 219596 11483335 ~ 11504634 (+) False XLOC_027156
TCONS_00053510 mRNA upstream 241040 11479758 ~ 11483190 (+) False XLOC_027155
TCONS_00053532 mRNA downstream 283913 12013043 ~ 12026507 (+) False XLOC_027163
TCONS_00053533 mRNA downstream 284512 12013642 ~ 12024397 (+) True XLOC_027163
TCONS_00053534 mRNA downstream 302828 12031958 ~ 12033866 (+) True XLOC_027164
TCONS_00053535 mRNA downstream 382024 12111154 ~ 12239160 (+) False XLOC_027167
TCONS_00053536 mRNA downstream 383975 12113105 ~ 12230144 (+) False XLOC_027167
TCONS_00053515 other upstream 158074 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053484 other upstream 960945 10752740 ~ 10763285 (+) False XLOC_027142
TCONS_00053480 other upstream 1010646 10706755 ~ 10713584 (+) False XLOC_027140
TCONS_00053451 other upstream 2125530 9592531 ~ 9598700 (+) True XLOC_027123
TCONS_00053421 other upstream 3220429 8503687 ~ 8503801 (+) True XLOC_027102
TCONS_00053538 other downstream 563155 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053572 other downstream 1699875 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053579 other downstream 1855353 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053602 other downstream 2377381 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053603 other downstream 2387236 14116366 ~ 14119559 (+) False XLOC_027201

Expression Profile

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