RNA id: TU2190276



Basic Information


Item Value
RNA id TU2190276
length 327
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G1915303
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23346745 ~ 23347071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataaccccactcactttgccaaagcacggcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagcccacaaagatctctgccatggcacaacccaagggggggcgccaacccagacaggatgaccacatcagtgaatcaacccactcaggtgacgcaccccttccagggacggcatgagagagccctagtaagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2190275 lncRNA downstream 354 23345934 ~ 23346391 (-) True G1915302
TU2190273 lncRNA downstream 2004 23344014 ~ 23344741 (-) True G1915300
TU2190269 lncRNA downstream 34598 23311517 ~ 23312147 (-) True G1915296
TU2190258 lncRNA downstream 36834 23308837 ~ 23309911 (-) True G1915288
TU2190248 lncRNA downstream 50840 23295670 ~ 23295905 (-) True G1915279
TU2190277 lncRNA upstream 456 23347527 ~ 23347809 (-) True G1915304
TU2190278 lncRNA upstream 755 23347826 ~ 23348406 (-) True G1915305
TU2190279 lncRNA upstream 1972 23349043 ~ 23349512 (-) True G1915306
TU2190280 lncRNA upstream 2626 23349697 ~ 23349992 (-) True G1915307
TU2190281 lncRNA upstream 3381 23350452 ~ 23350690 (-) True G1915308
XM_021582843.2 mRNA downstream 4974 23330119 ~ 23341771 (-) False LOC110504040
XM_021582844.2 mRNA downstream 4974 23330119 ~ 23341771 (-) True LOC110504040
LOC110503370 mRNA downstream 46066 23281883 ~ 23300679 (-) True LOC110503370
XM_021582838.2 mRNA downstream 51556 23226797 ~ 23295189 (-) False LOC110504038
XM_021582845.2 mRNA upstream 5041 23352112 ~ 23358074 (-) False LOC110504042
XM_036961553.1 mRNA upstream 5041 23352112 ~ 23358660 (-) True LOC110504042
XM_021582846.2 mRNA upstream 13082 23360153 ~ 23372569 (-) False glb1l2
XM_021582847.2 mRNA upstream 13082 23360153 ~ 23388694 (-) False glb1l2
XM_021582848.2 mRNA upstream 13082 23360153 ~ 23388694 (-) False glb1l2
TU2188549 other downstream 1474596 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 1482471 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 2370509 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2885308 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 3655232 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 404772 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 2816394 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 2863345 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 3563713 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 3982379 27329450 ~ 27331899 (-) True G1919707

Expression Profile