RNA id: TU2194807



Basic Information


Item Value
RNA id TU2194807
length 315
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1919365
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 26836043 ~ 26836463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggcttgtcaccaaaagcactcacaaacatctacagatgcacaatcgagagcatcctgtcgggctggacacctacaccacccgatgtcacaggaaggccataaagatcatcaagaacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacagctgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacacactgactcaactccagccactttaataatgggaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2194724 lncRNA downstream 94049 26723806 ~ 26741994 (-) True G1919286
TU2194558 lncRNA downstream 348349 26487092 ~ 26487694 (-) True G1919136
TU2194554 lncRNA downstream 358164 26477665 ~ 26477879 (-) True G1919132
TU2194523 lncRNA downstream 423399 26408222 ~ 26412644 (-) True G1919104
TU2194504 lncRNA downstream 448543 26387298 ~ 26387500 (-) True G1919090
TU2194776 lncRNA upstream 66364 26902827 ~ 26904109 (-) True G1919335
TU2194867 lncRNA upstream 112760 26949223 ~ 26949453 (-) True G1919425
TU2194890 lncRNA upstream 211113 27047576 ~ 27047891 (-) True G1919448
TU2195101 lncRNA upstream 300656 27137119 ~ 27137543 (-) True G1919613
TU2195103 lncRNA upstream 301391 27137854 ~ 27138464 (-) True G1919614
XM_021582918.2 mRNA downstream 213653 26616423 ~ 26622390 (-) True LOC110504093
XM_021582912.2 mRNA downstream 378905 26404705 ~ 26457138 (-) True LOC110504088
XM_036961844.1 mRNA downstream 594633 26211927 ~ 26241410 (-) False LOC110503381
XM_036961841.1 mRNA downstream 594650 26208892 ~ 26241393 (-) False LOC110503381
XM_021582917.2 mRNA upstream 49696 26886159 ~ 26895600 (-) True LOC110504092
XM_036961092.1 mRNA upstream 73620 26910083 ~ 26932122 (-) False LOC110504098
XR_002470560.2 mRNA upstream 99870 26936333 ~ 26938461 (-) True LOC110504099
XM_036961516.1 mRNA upstream 119320 26955783 ~ 26980940 (-) False LOC110504100
XM_036961510.1 mRNA upstream 119320 26955783 ~ 27026046 (-) False LOC110504100
TU2193901 other downstream 624172 26210416 ~ 26211871 (-) True LOC110503381
TU2193838 other downstream 670798 26163465 ~ 26165245 (-) True LOC110504083
TU2190851 other downstream 3083580 23751843 ~ 23752463 (-) True G1915836
TU2188549 other downstream 4963894 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 4971769 21863588 ~ 21864274 (-) True G1913665
TU2194781 other upstream 74321 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 492987 27329450 ~ 27331899 (-) True G1919707
TU2196189 other upstream 1183867 28020330 ~ 28022222 (-) False G1920555
TU2196580 other upstream 1695580 28532043 ~ 28532321 (-) True G1920872
TU2197082 other upstream 2006788 28843251 ~ 28844834 (-) True LOC110504136

Expression Profile