Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053540 |
| length | 814 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 3 |
| gene id | XLOC_027168 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 12292274 ~ 12307834 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020213-1 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1). |
| ensembl_id | ENSDART00000133672 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00057647 | lncRNA | upstream | 53148 | 12234797 ~ 12239160 (+) | True | XLOC_027167 |
| TCONS_00057646 | lncRNA | upstream | 226945 | 12063991 ~ 12065363 (+) | True | XLOC_027166 |
| TCONS_00057645 | lncRNA | upstream | 239638 | 12039649 ~ 12052670 (+) | True | XLOC_027165 |
| TCONS_00053530 | lncRNA | upstream | 343527 | 11947846 ~ 11948781 (+) | False | XLOC_027162 |
| TCONS_00053542 | lncRNA | downstream | 5631 | 12304608 ~ 12306634 (+) | False | XLOC_027168 |
| TCONS_00057648 | lncRNA | downstream | 5631 | 12304608 ~ 12306665 (+) | False | XLOC_027168 |
| TCONS_00053543 | lncRNA | downstream | 7295 | 12306272 ~ 12306665 (+) | True | XLOC_027168 |
| TCONS_00057649 | lncRNA | downstream | 453577 | 12752554 ~ 12755202 (+) | True | XLOC_027175 |
| TCONS_00057650 | lncRNA | downstream | 514223 | 12813200 ~ 12819377 (+) | False | XLOC_027176 |
| TCONS_00053535 | mRNA | upstream | 53148 | 12111154 ~ 12239160 (+) | False | XLOC_027167 |
| TCONS_00053536 | mRNA | upstream | 62164 | 12113105 ~ 12230144 (+) | False | XLOC_027167 |
| TCONS_00053534 | mRNA | upstream | 258442 | 12031958 ~ 12033866 (+) | True | XLOC_027164 |
| TCONS_00053532 | mRNA | upstream | 265801 | 12013043 ~ 12026507 (+) | False | XLOC_027163 |
| TCONS_00053533 | mRNA | upstream | 267911 | 12013642 ~ 12024397 (+) | True | XLOC_027163 |
| TCONS_00053544 | mRNA | downstream | 9999 | 12308976 ~ 12312976 (+) | True | XLOC_027169 |
| TCONS_00053545 | mRNA | downstream | 34191 | 12333168 ~ 12360465 (+) | False | XLOC_027170 |
| TCONS_00053546 | mRNA | downstream | 34259 | 12333236 ~ 12336573 (+) | False | XLOC_027170 |
| TCONS_00053547 | mRNA | downstream | 41678 | 12340655 ~ 12342586 (+) | False | XLOC_027170 |
| TCONS_00053548 | mRNA | downstream | 43196 | 12342173 ~ 12344639 (+) | False | XLOC_027170 |
| TCONS_00053520 | other | upstream | 563178 | 11724230 ~ 11729130 (+) | True | XLOC_027159 |
| TCONS_00053515 | other | upstream | 726152 | 11566040 ~ 11566156 (+) | True | XLOC_027157 |
| TCONS_00053484 | other | upstream | 1529023 | 10752740 ~ 10763285 (+) | False | XLOC_027142 |
| TCONS_00053480 | other | upstream | 1578724 | 10706755 ~ 10713584 (+) | False | XLOC_027140 |
| TCONS_00053451 | other | upstream | 2693608 | 9592531 ~ 9598700 (+) | True | XLOC_027123 |
| TCONS_00053572 | other | downstream | 1130028 | 13429005 ~ 13431011 (+) | True | XLOC_027186 |
| TCONS_00053579 | other | downstream | 1285506 | 13584483 ~ 13584581 (+) | True | XLOC_027191 |
| TCONS_00053602 | other | downstream | 1807534 | 14106511 ~ 14108810 (+) | False | XLOC_027200 |
| TCONS_00053603 | other | downstream | 1817389 | 14116366 ~ 14119559 (+) | False | XLOC_027201 |
| TCONS_00053612 | other | downstream | 2426097 | 14725074 ~ 14725214 (+) | True | XLOC_027211 |
