RNA id: TCONS_00053562


Basic Information

Item Value
RNA id TCONS_00053562
length 540
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_027178
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12966640 ~ 12968021 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTACAGCGACACTGCATCTGTCAGAGCAGCAGCACCATGGCTGAGCAGGAAGCGCCCGCACCTCTAAAATCTCTCAACTCCGATGATCCAACATACATTTCTTTTATTAACAAATCCAACAGAACAGCAGAAGCATGGTGGCTGAACTTCTCGGGAAAGCCGGTGTCTTACGGCGACATAAATCCAGGGAAATCTCTTCAGATGAACACTTATCTGACTCATCCATGGATGTTCAGAGCATCTGATGGAGCTAAACTGCTGGTTAGCTTCAGTGAAGTTTACTTTCCTGCTCCTGCGCAGTATGATGATTACGGGCACCCGCATTTCCAGGCGGTCTACGTCACTACTCCAAtGTATTCATTACAAGAATGCTGCCTGCGGCTGATCAGGAGTTTGGTGAGAAAACAAGACATCTGCAAGCTGGAAATACCTGAGGGTTTGAGACAGGACATCAGGCGCGCGCCTGATTTACTGAGAGACATCCAGACATTATCCGCCGCGAGAGATCTGTGAAGGCTACAAACAGAGCCATTTCTCTC

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0030891 VCB complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-78 Predicted to be involved in protein ubiquitination. Predicted to be part of VCB complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including pancreatic cancer (multiple); pheochromocytoma; polycythemia (multiple); renal cell carcinoma; and von Hippel-Lindau disease. Orthologous to human VHLL (VHL like) and VHL (von Hippel-Lindau tumor suppressor).

Ensembl:

ensembl_id ENSDART00000113357

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057650 lncRNA upstream 147263 12813200 ~ 12819377 (+) False XLOC_027176
TCONS_00057651 lncRNA upstream 147263 12813576 ~ 12819377 (+) True XLOC_027176
TCONS_00057649 lncRNA upstream 211438 12752554 ~ 12755202 (+) True XLOC_027175
TCONS_00057648 lncRNA upstream 659975 12304608 ~ 12306665 (+) False XLOC_027168
TCONS_00057652 lncRNA downstream 11491 12979512 ~ 12980325 (+) True XLOC_027179
TCONS_00057653 lncRNA downstream 12675 12980696 ~ 12985047 (+) True XLOC_027181
TCONS_00057655 lncRNA downstream 29099 12997120 ~ 13002197 (+) False XLOC_027182
TCONS_00057654 lncRNA downstream 29099 12997120 ~ 13002197 (+) False XLOC_027182
TCONS_00057657 lncRNA downstream 29099 12997120 ~ 13024021 (+) False XLOC_027182
TCONS_00053561 mRNA upstream 9922 12931763 ~ 12956718 (+) True XLOC_027177
TCONS_00053560 mRNA upstream 242236 12702440 ~ 12724404 (+) True XLOC_027174
TCONS_00053557 mRNA upstream 287347 12615836 ~ 12679293 (+) False XLOC_027173
TCONS_00053559 mRNA upstream 288352 12617212 ~ 12678288 (+) True XLOC_027173
TCONS_00053558 mRNA upstream 308828 12617108 ~ 12657812 (+) False XLOC_027173
TCONS_00053563 mRNA downstream 11632 12979653 ~ 12998711 (+) True XLOC_027180
TCONS_00053570 mRNA downstream 444009 13412030 ~ 13425447 (+) True XLOC_027185
TCONS_00053571 mRNA downstream 460972 13428993 ~ 13434027 (+) False XLOC_027186
TCONS_00053573 mRNA downstream 481754 13449775 ~ 13462784 (+) False XLOC_027187
TCONS_00053574 mRNA downstream 484416 13452437 ~ 13461594 (+) False XLOC_027187
TCONS_00053538 other upstream 664645 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053520 other upstream 1237510 11724230 ~ 11729130 (+) True XLOC_027159
TCONS_00053515 other upstream 1400484 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053484 other upstream 2203355 10752740 ~ 10763285 (+) False XLOC_027142
TCONS_00053480 other upstream 2253056 10706755 ~ 10713584 (+) False XLOC_027140
TCONS_00053572 other downstream 460984 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053579 other downstream 616462 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053602 other downstream 1138490 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053603 other downstream 1148345 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053612 other downstream 1757053 14725074 ~ 14725214 (+) True XLOC_027211

Expression Profile

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