RNA id: TCONS_00053577


Basic Information

Item Value
RNA id TCONS_00053577
length 2026
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_027190
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13568469 ~ 13576215 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGCGAACGGACTCCACTGGTCGTGATTTGATTGGGCTGCGGCGCTCTTCTCGTCCGAAAAACGGTGTGGCACAGGGGTGTGAGGATTAAACCAAAGACCCTGTATTGTGTCTGGGATTCTCGGCCTCCTAAATAATTAAGAGCTTGGAAGATGAAGATGGAAATTAGGCCTTTGTTGATGTGCTTTGCTCTGTGCGTGGTTTACGCCACCAGCAAACCAACAGAGAAGAAAGACAGGGTCCACCATGATGCACCCCTGAGCAGCAAAGAGCATGACGATGGCACAAACTTTGAATACGACCACGATGCCTTCCTTGGAGAAGAAGAAGCCAAAACATTTGATGATCTGACTCCGGAAGAAAGCAAAAATAGGCTTGGTAAAATTGTGGAAAAGATTGATGCAGATGAGGATGGTTTTGTGACAGAGGCCGAGCTGAAAGCATGGATCAAAAAGGCtcaaaagaaatacatttatgaCAATGTGGAGAGACAATGGAAGGATTTTGATCTGAACAACGATAGAATGATCTCCTGGGAAGAATACAAGAACGTCACCTATGGCACCTACCTTGATGATCCTGAACCTGATGATGGCTATAACTACAAACAGATGATGGCCAGAGATGAACGCCGCTTTAAAATGGCTGATGGGAATGGAGACCACATCGCTGATAAAGAGGAGTTCACGGCTTTCCTCCATCCTGAGGAGTATGAACATATGAAGGACATTGTTGTGCTGGAAACAATGGAGGACATTGACAAGAATGGTGATGGGTTTATTGATTTGGAGGAGTATATTGGTGACATGTACAACCATGAGGATGAAATGGACGAGCCGGAGTGGGTGGCGACAGAGCGAGAGCAGTTTTCGGAGTTCAGAGACAAGAACAAGGATGGCAAAATGGACAGGGAAGAAACCATGGACTGGATCCTACCAGCCGACTACGATCACGCTGAAGCCGAAGCGAAGCATCTGGTGTATGAGTCTGACACAAACAAGGATGGAAAGCTGACCAAAGAAGAAATACTCAACAAGTATGATTTGTTTGTGGGAAGCCAAGCGACTGACTTCGGGGAGGCATTAGTTCGACATGatgagttttaattatttcttttttagtaTAATAGATAATTACTTTTTAACTTGTTTTGGTAAaagaatataattttatattgcCTCATCATAATACAACACTAATTCCTCAGAATTTTGTTCACTTGATTTTCCTTTTTGCACAAATTTCATAGCTTTTTTTGTACTGTAAAGTGTGTaacttttgtttgatttgaagtcCATGTAcagcattattatcatcatttcaGTAACTGTATATGTCTGTTTTTTATTGAGAAGCGGTTGATGGATTCAGTGCAGTTTTATACACATTGCTACAGATCTATAATCGGCTCCCCCTGCTGTTCACAGTTCTGTCGTAAGAATATTGTAAGTACAGAAAGCTCTCATGTTGATTTTTGAGGGTTTATACAAATATGtataacatattaaatatatattcacacaTAAAAATGTGAATATGTATTTGTTATCTCACATTTCAAAGCAGAAACATCTGTTTTTGAGTGATGACTCTTCATTTTTCTCTCCAGGCAATActgttgtctttttttatttatttagaagaaCAATACATGTCCATGAACTTTAATCATTGTGCCTTTCATTGATTTTCCTGTTAGATTTAGATCTTAGCTtgtattatatgtgtataatTCAAATCTTTTGGGTTTGTTGGGTCCATCAGAACACGTTACTGAACAATTTGTTGCCTTCAACTTTATTATTTGAAATGCATTACCAATTACATGATGTTTGTAACATGTTTAATATGCTGCAAACACATCAATCTCCCCCATTGtctattcatttttcttttatctttatttttttcagtatataATGTTTGGCACCTAAAGGTTTCAGGTCACTTGTTGCGAATGGTGCTGTTTCACCACCTGCAGATTGTATCTCGAACACAAATtgtcaataaaaccaaaatatgagct

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0042470 melanosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0033018 sarcoplasmic reticulum lumen cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-166 Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and melanosome. Predicted to be active in endoplasmic reticulum. Is expressed in chordo neural hinge; floor plate; hypochord; notochord; and skeletal system. Orthologous to human CALU (calumenin).

Ensembl:

ensembl_id ENSDART00000171235

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057134 lncRNA upstream 75113 13489682 ~ 13493356 (+) True XLOC_027189
TCONS_00057668 lncRNA upstream 98572 13468591 ~ 13469897 (+) True XLOC_027188
TCONS_00053576 lncRNA upstream 106875 13453364 ~ 13461594 (+) True XLOC_027187
TCONS_00053569 lncRNA upstream 293834 13270792 ~ 13274635 (+) False XLOC_027184
TCONS_00053568 lncRNA upstream 293834 13270792 ~ 13274635 (+) False XLOC_027184
TCONS_00057669 lncRNA downstream 7845 13584054 ~ 13586183 (+) False XLOC_027191
TCONS_00053583 lncRNA downstream 17322 13593531 ~ 13597427 (+) True XLOC_027192
TCONS_00053587 lncRNA downstream 54805 13631014 ~ 13631677 (+) False XLOC_027194
TCONS_00057135 lncRNA downstream 300695 13876904 ~ 13890091 (+) True XLOC_027198
TCONS_00057136 lncRNA downstream 530306 14106515 ~ 14106866 (+) True XLOC_027200
TCONS_00053573 mRNA upstream 105685 13449775 ~ 13462784 (+) False XLOC_027187
TCONS_00053575 mRNA upstream 105685 13452907 ~ 13462784 (+) False XLOC_027187
TCONS_00053574 mRNA upstream 106875 13452437 ~ 13461594 (+) False XLOC_027187
TCONS_00053571 mRNA upstream 134442 13428993 ~ 13434027 (+) False XLOC_027186
TCONS_00053570 mRNA upstream 143022 13412030 ~ 13425447 (+) True XLOC_027185
TCONS_00053580 mRNA downstream 10246 13586455 ~ 13604351 (+) False XLOC_027192
TCONS_00053581 mRNA downstream 10480 13586689 ~ 13605156 (+) False XLOC_027192
TCONS_00053582 mRNA downstream 10480 13586689 ~ 13605158 (+) False XLOC_027192
TCONS_00053584 mRNA downstream 39522 13615731 ~ 13624294 (+) False XLOC_027193
TCONS_00053585 mRNA downstream 39524 13615733 ~ 13617953 (+) True XLOC_027193
TCONS_00053572 other upstream 137458 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053538 other upstream 1266474 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053520 other upstream 1839339 11724230 ~ 11729130 (+) True XLOC_027159
TCONS_00053515 other upstream 2002313 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053484 other upstream 2805184 10752740 ~ 10763285 (+) False XLOC_027142
TCONS_00053579 other downstream 8274 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053602 other downstream 530302 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053603 other downstream 540157 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053612 other downstream 1148865 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053616 other downstream 1156774 14732983 ~ 14733123 (+) True XLOC_027213

Expression Profile

//