Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053583 |
| length | 805 |
| lncRNA type | retained_intron |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_027192 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 13586455 ~ 13605158 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006606 | protein import into nucleus | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0030217 | T cell differentiation | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-708 | Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 2. Orthologous to human TNPO3 (transportin 3). |
| ensembl_id | ENSDART00000144745 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00057669 | lncRNA | upstream | 7348 | 13584054 ~ 13586183 (+) | False | XLOC_027191 |
| TCONS_00057134 | lncRNA | upstream | 100175 | 13489682 ~ 13493356 (+) | True | XLOC_027189 |
| TCONS_00057668 | lncRNA | upstream | 123634 | 13468591 ~ 13469897 (+) | True | XLOC_027188 |
| TCONS_00053576 | lncRNA | upstream | 131937 | 13453364 ~ 13461594 (+) | True | XLOC_027187 |
| TCONS_00053568 | lncRNA | upstream | 318896 | 13270792 ~ 13274635 (+) | False | XLOC_027184 |
| TCONS_00053587 | lncRNA | downstream | 33587 | 13631014 ~ 13631677 (+) | False | XLOC_027194 |
| TCONS_00057135 | lncRNA | downstream | 279477 | 13876904 ~ 13890091 (+) | True | XLOC_027198 |
| TCONS_00057136 | lncRNA | downstream | 509088 | 14106515 ~ 14106866 (+) | True | XLOC_027200 |
| TCONS_00057670 | lncRNA | downstream | 520616 | 14118043 ~ 14119559 (+) | True | XLOC_027201 |
| TCONS_00057137 | lncRNA | downstream | 552633 | 14150060 ~ 14158028 (+) | True | XLOC_027202 |
| TCONS_00053578 | mRNA | upstream | 17316 | 13568526 ~ 13576215 (+) | True | XLOC_027190 |
| TCONS_00053577 | mRNA | upstream | 17322 | 13568469 ~ 13576209 (+) | False | XLOC_027190 |
| TCONS_00053573 | mRNA | upstream | 130747 | 13449775 ~ 13462784 (+) | False | XLOC_027187 |
| TCONS_00053584 | mRNA | downstream | 18304 | 13615731 ~ 13624294 (+) | False | XLOC_027193 |
| TCONS_00053585 | mRNA | downstream | 18306 | 13615733 ~ 13617953 (+) | True | XLOC_027193 |
| TCONS_00053586 | mRNA | downstream | 28465 | 13625892 ~ 13643203 (+) | False | XLOC_027194 |
| TCONS_00053588 | mRNA | downstream | 43476 | 13640903 ~ 13643616 (+) | True | XLOC_027194 |
| TCONS_00053589 | mRNA | downstream | 99110 | 13696537 ~ 13728375 (+) | False | XLOC_027195 |
| TCONS_00053579 | other | upstream | 8950 | 13584483 ~ 13584581 (+) | True | XLOC_027191 |
| TCONS_00053572 | other | upstream | 162520 | 13429005 ~ 13431011 (+) | True | XLOC_027186 |
| TCONS_00053538 | other | upstream | 1291536 | 12292285 ~ 12301995 (+) | False | XLOC_027168 |
| TCONS_00053520 | other | upstream | 1864401 | 11724230 ~ 11729130 (+) | True | XLOC_027159 |
| TCONS_00053515 | other | upstream | 2027375 | 11566040 ~ 11566156 (+) | True | XLOC_027157 |
| TCONS_00053602 | other | downstream | 509084 | 14106511 ~ 14108810 (+) | False | XLOC_027200 |
| TCONS_00053603 | other | downstream | 518939 | 14116366 ~ 14119559 (+) | False | XLOC_027201 |
| TCONS_00053612 | other | downstream | 1127647 | 14725074 ~ 14725214 (+) | True | XLOC_027211 |
| TCONS_00053616 | other | downstream | 1135556 | 14732983 ~ 14733123 (+) | True | XLOC_027213 |
| TCONS_00053629 | other | downstream | 1477139 | 15074566 ~ 15074663 (+) | False | XLOC_027223 |
