RNA id: TCONS_00053590


Basic Information

Item Value
RNA id TCONS_00053590
length 3886
RNA type mRNA
GC content 0.50
exon number 28
gene id XLOC_027195
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13696537 ~ 13728375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATTTTGATGTAACGCAGCCTTGCCATGGACGGGAAGAGGAGCTGCTCGCTCTGTGGAGGAgcgatgatgataatgatgatgatgatgatgatcagtcACATGACCTCCGCATTAGAAGTGCCTCTAGACTTGCCTCAGCCTCCAACAATAACTAATCAGTCCCCCAAGGATTATATCATCGACCCTCGGGAGAACATCAATATCTTCTGCGAGGCGAAAGGAAAGCCTCATCCCAGCTTTTCATGGACACGTAACGGCACGCATTTTGATGTGGAAAAGGATCCCAAAGTTGTCATGATGCCCGGCACAGGCAATCTAGTCATCGACATCAGCGGAGAGAAGGCTGAGGTTTATGAGGGTGTTTATCAGTGCATCGCCCGCAACGAGCACGGCTCTGCTGTGTCCAATAACATCGTCATCCGTCAATCAAGGTCCCCCTTGTGGTCAAAAGAGAAAAACGAACCAATCACAGTGCAGAGAGGAACGTCTCTAATACTGCAGTGCAGACCCCCAGCTGGCCTGCCTCCTCCTATCATCTTCTGGATGGATAACAATTTCCAGAGACTTCCCCAGAACAGTCGTGTGTCGCAGGCTTTAAACGGAGACCTGTATTTCTCCAACGTGATCATGGAAGACACCAGAAACGACTACATCTGCTACGCCCGCTTCCCACACACTCAGACTATCCAACAGAAACAGCCCATCACCGTCAAAGTGCTGGACATTGAAGCTATGAATGACACTGTGTTGGCAGCTTTTTTGAATGGCTCAGATTTTTGGGGTGACAGTCCATCTGGGGAGAGAGTGCCCTCTTTTCTGCATCCACCAGGAATGGAAAGTACCACCATGGTCTTGAAAGGAGATACGCTGGAACTGGAATGCATTGCAGATGGCCTTCCAACGCCAAATATCTCCTGGACTAAGGTGAACGGGGAGCTGCCAAGTGGGCGTTTTTCATTTTACAGTTTCCAGAAAACTCTGAAGATAAAAGAGGTGACAGAAGCAGACGGGGGAGATTACCGATGTATAGCCAAGAATCGCATGGGGAGCAGCCAACACACCATCACCGTAGTGGTCAGAGCGGCTCCCTTTTGGATCAGTGCCCCTCAGAACCTCATCTTGGCCCCAAAAGAGACTGGAAACCTCACCTGCGATGTTGATGGAAACCCTAAACCCACAATTACATGGTCTGTCAATGGAAATCCCATTGAAAGCTCACATAATGACCCAAGCCGCAAAGTGTCAGATGGCGTCATCACCCTCAGTGACGTTCAGACAGGCTCCAGCGCCGTCTACCAGTGCAACGCCTCTAATGATTACGGTTACCTGCTGGCCAATGCCTTTGTCAGTGTACTAGCTGAACCACCAAGAGTGCTGACGTCTCTAAATCACGAGTACTCAGTCATCAGTAACAGCAGAGCTCTGTTAGACTGTGCTTCTTTTGGCTCGCCACTTCCAAAAATCACATGGTTTAAAGACAGTCAGAGTATACTGAACAGTGACTTGTACCACATTCATAAGAACGGTACATTAGAGATCAATGTAGCTCAGCCACAAAACAGCGGCAAGTACACTTGTATAGCATCAAACAATCTTGGCAACAAAGAGAATCACGTCCACCTGCAAGTGAAAGAGCCTACACGAATCATCAGGCAGCCGGAGTATAAAGAGGTCCAGAGGAACTCCATAGCTGTGTTCGAGTGTAAGGTCAAACATGATCCCACTCTCATTCCCTCCATGATATGGCTTAAAGACAACGGAGAGCTTCCTGACGACCCTCGATTTGAGGTTGGCTCTGATAGTCTGACTATACATGATGTGACAGAGGATGATGAAGGCACCTACACCTGCATCAGAAACACCACCCTGGACCAAGATTCAGCCAGCGCCACACTCACAGTAGTCGAGCAACCGGACCCACCAACTGACCTGGAGCTGACTGACCAGCGCGAGCGCAGTGTTCGGCTAACATGGACCCCTGGAGATGAACACAACAGCCCGATTAAATTGTTCCTGATCCAGTATGAAGATTCACTCCATGAGCCTGGAGTCTGGCTCAATATGACCGAGGTCTCGGGAACCAGCACAACAGCCCAGCTGGAGTTGTCCCCCTATGTGTATTACTCCTTCAGGGTTCTGGCACTCAATGGCGTGGGTCTGAGTGAATCCAGCGATCCATCTAGACAGTACAGAACCAATCCTGCAAAGCCTGATGTGAATCCATCAGATGTTGAAGTCAGTGGAACATCACCTGACACTATGACAATATCTTGGAGGGAGCTGAGTGGCCTTGAGTCTAATGGTCCAGGTTTACAGTACAAGGTGAGCTGGAGAATGAAAGATGCGGAGCAGTGGACGACAGTCACGCTGGCCAATGTCTCGCAGCATGTGGTGACAGGAACACCCACTTTTACACTTTATGAAGTCACTGTACAGGCGGTCAATGATTATGGAGAAGGCCCCAGACCAGAGGTGGTGCTGGGATACTCAGGAGAAAACTCACCCACAGTGGCCCCAGAGAACGTAAAAGTTTCAGTTCAGAGCGGGACAGAGGCTGAAGTGCACTGGGAAGCTGTTCCTCTTTCATCAGTCCGGGGTCGACTGAAAGGATACAAGGTGACGTATCAGAAGATGAGAAGTTTACACAAGCAAGACTATGATCGTGAGAATCCCCAGGTGCTCATCTTCAGTGGGGAGGAGACTGTGGGACGTCTGCCAGACCTTCACCCCTACAGCCATTACAGACTCAACATCAGAGCCTTCAACGGGCATGGAGACGGACCCTCCAGCACTGACCAGCAGTTCCAGACACCAGAGGGAGTTCCTGGGCCTCCTACAAATGTAAACATCCGGAATCTGAACCTGGACTCTTTGCTGGTGGAGTGGACACCACCTTTGGAAGACAACGGACACTTGACTGGATACTTGTTGAAATATCAGCCAATCAATACAACAGAAGAAGCTGGACTGCTCAAAGAAGTCCTTTTACCAGCAAACGAGACCAGTTACACACTCGACAAGCTTACGCACAGCACACACTACAAGTTCTTCCTGAACGCCATGACTGAAACAGGCTCGGGACCTGCTGTCACTAAAGAGGCCTTCACAGAAGTGGACGAAGCGTTAATTCGACATCCCGCAGTAGAGGCGGGTAAAGcgccacctgctggtccGATGTTTGGAAACGTGAACTCCTCGGTGAAGGAGGACCATGCAGTCATAAGCTGGGAATACTTGGGGCCCGATGGGAATGTTTATGTGGAATATGTTGTTGATAACAGTAAAGAACCCTGGAAAACCGAGTTTGTAAATGGCACTCGGACATTTCAGATTAGAGGACTAAAGCCGGGGATGTCCTATAGGGTCCGATTGGTAGCCAAAGACCATTCAGACGCAACCATCCACAGTACACAAGAGATGTTGATAACAGTTCCAGccatgaccaacaggcaggctgaaatAGCCACACAAGGTTGGTTTATCGGTCTGATGTGTGCCATCGCTTTGCTGATCCTGGTGCTCCTCATCGTCTGCTTTATAAAGAGGAACAAAGGAGGCAAATATCCAGtaaaagagAAAGAAGATGCCCATCAAGACCCAGAGATTCAGCCTATGAAAGAGGATGATGGGACATTTGGGGAGTACAGTGATACGGAGGATCACAAGCCCCTAAAGGGCAGCCGGACACCATCCAATGGCACGGTCAAGAAGGACGACAGTGACGACAGCCTGGTGGATTACGGCGAGGGAGGAGACGGCCAGTTTAATGAGGATGGGTCGTTCATTGGCCAGTACAGCGGGAAGAAGGAAAAAGACACTGCGGAGGGAAACGAGAGTTCGGAGGCTCCTTCTCCAGTCAACGCCATGAACTCCTTTGTGTAACC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-235 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NRCAM (neuronal cell adhesion molecule).

Ensembl:

ensembl_id ENSDART00000122041

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053587 lncRNA upstream 64893 13631014 ~ 13631677 (+) False XLOC_027194
TCONS_00053583 lncRNA upstream 99143 13593531 ~ 13597427 (+) True XLOC_027192
TCONS_00057669 lncRNA upstream 110387 13584054 ~ 13586183 (+) False XLOC_027191
TCONS_00057134 lncRNA upstream 203214 13489682 ~ 13493356 (+) True XLOC_027189
TCONS_00057668 lncRNA upstream 226673 13468591 ~ 13469897 (+) True XLOC_027188
TCONS_00057135 lncRNA downstream 148574 13876904 ~ 13890091 (+) True XLOC_027198
TCONS_00057136 lncRNA downstream 378185 14106515 ~ 14106866 (+) True XLOC_027200
TCONS_00057670 lncRNA downstream 389713 14118043 ~ 14119559 (+) True XLOC_027201
TCONS_00057137 lncRNA downstream 421730 14150060 ~ 14158028 (+) True XLOC_027202
TCONS_00057671 lncRNA downstream 434013 14162343 ~ 14167862 (+) True XLOC_027203
TCONS_00053588 mRNA upstream 52954 13640903 ~ 13643616 (+) True XLOC_027194
TCONS_00053586 mRNA upstream 53367 13625892 ~ 13643203 (+) False XLOC_027194
TCONS_00053584 mRNA upstream 72276 13615731 ~ 13624294 (+) False XLOC_027193
TCONS_00053585 mRNA upstream 78617 13615733 ~ 13617953 (+) True XLOC_027193
TCONS_00053582 mRNA upstream 91412 13586689 ~ 13605158 (+) False XLOC_027192
TCONS_00053592 mRNA downstream 5508 13733838 ~ 13756690 (+) False XLOC_027196
TCONS_00053593 mRNA downstream 5508 13733838 ~ 13756716 (+) True XLOC_027196
TCONS_00053594 mRNA downstream 82481 13810811 ~ 13861445 (+) True XLOC_027197
TCONS_00053595 mRNA downstream 173128 13901458 ~ 13944143 (+) False XLOC_027199
TCONS_00053597 mRNA downstream 181068 13909398 ~ 13962715 (+) False XLOC_027199
TCONS_00053579 other upstream 111989 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053572 other upstream 265559 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053538 other upstream 1394575 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053520 other upstream 1967440 11724230 ~ 11729130 (+) True XLOC_027159
TCONS_00053515 other upstream 2130414 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053602 other downstream 378181 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053603 other downstream 388036 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053612 other downstream 996744 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053616 other downstream 1004653 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053629 other downstream 1346236 15074566 ~ 15074663 (+) False XLOC_027223

Expression Profile

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