RNA id: TCONS_00053592


Basic Information

Item Value
RNA id TCONS_00053592
length 4736
RNA type mRNA
GC content 0.44
exon number 24
gene id XLOC_027196
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13733838 ~ 13756716 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCACAAATGCTTGAAATCACCTTGACAGCTTTGCGACCCTCTGCAGAAGCACATGGACTCGGTCAGCATCCCTCTGTGCTTCAGCATCCAGACATGCGCAGCTCCGCGCTCCTCCAATAGCaggccgtgtgtgtgtgcgtctcgCGCCGGGCTGCGGGACGGGGCGCTGCTTGGCTGGTGGATTTAACGCGTTTTTCTGGTCTGGTTTTTGGACTGCTGGATCAAGATGGCGACCCCAGGCCCAGCCATGCTATTGTCTCTTTTCTCCTGCTTCTTCCTATTAGCAGCTGCAATTAAACCCAGGATCTTTGAACCCAGGATTTTTGACAAGGAGGCCACTGGCTTTGGGCCCATATTTGAGGAAGAGCCTCTGGACACTGTGTACGCGGAGGATTCACCTGAAAACAAAATATCTATGAACTGCAGGGTGCGTGCAAACCCACCGGCCATTATCAAGTGGTGGTTAAACAACTGGCAAATTAAGCTGATGGAGCAGCCAGATGAGCACTTCAGCCTGGTTGGAGGAAACCTGGTCATTACAAACCCAGAAAAAAACAAGCATGCTGGAAAATATGTATGTGTGGCCAAGAACGTGTACGGCACCGTCATGAGCAAAGAGGCCAACGTCAAGTTTGGATACCTGAACCAGTTTCCTACAGATGAGAGAGAGCCGGTGAATGTGAAGGAAGGACAGGGAGCTGTTCTGCTGTGTACACCTCCCTCTCGCTATCCAGATGAGGTGATGTTCCGCTGGATCTACAATGACTTCCCTAACTTCATCCTCCCAGATCAGCGGCGCTTCGTCTCTCAGAGCACCGGGAATCTGTACATTGCGAAAGTCGAGCCGTCTGATGTCGGCAATTATTCCTGTTTTGTGTCGAGCCCCACCATCGGCAAGAGTGTTTTCAGCATGCCTATAGCTCTGATTCCACAGATAGAGAAGGAAGTGAAGCGATATCCTGCTGATATCCGGGTGAAATTTCCTAAGACGTATGCTTTGGTGCACCAGAACATCACTCTGGAGTGCTTTGCACTTGGAAATCCTCTTCCACACATTCGCTGGAGGAAGCTAGACGCTGATCTCCCGCCAAACTATGAAGTCAGCATGAATGGAGCTTTACTTCACCTGATCAACGTCCAGTATGAGGACGAGGGCAGCTACGAGTGTGAGACGCTCAATGTGAAAGGGATGGACTGGTATCGACAGTGGCTCTATGTTGAAGGTCCTCCAGAGTGGGCGGAGCACATCAATGACACGGAGAAAGATGTCGGGAGTGAACTGACTCTCAGATGTGTTGCTGTTGGGAAACCAATACCATGGATACGTTGGCTAAAAGACGGCTATTCGTATGGCAAAGGGGAGCTGAAGTTTTCCAGTCTCACGTTTGAGGATTCGGGCATGTATCAGTGCATTGCTGAGAATGAATGGGGAACCATCTACGCCAATGCAGAGCTTCGGGTTGTCTCCTGTGCTCCGACGTTCATATATAACCCAGTGAAGAAGATTCTGCTTGGGGCTGAAAATGGACGTGTGGTCATAGAGTGCAATCCCCGTGCTGCTCCCAAACCCAGATTCATCTGGAAACGAGGCTCGGAGCTCCTGAGCAACTCCTCAAGGATATTCATTTGGGACGATGGAAGTCTGGAGATTCTGAATGCAACAAAAAGTGACGAGGGCTCATACACCTGCTATGCTGAGAATGATCGTGGCAAATCCAACAGCACTGGGACCCTCACTATTACTGAGGCCACCAAGATCACAGTTGGCCCATCAAACTCTGAGGCAGCTGTAGGGGATACAATAGTTCTCCAATGCTCTGCATCCTATGATCCCAGTCTGGACGTCACCTTCATCTGGACTGTCGATTCATACATCATTAACTTCTACACAGACTTTGAACACTACGAGCTGGACATGGATCATGAGAATAGCGGAGACCTGCTGATCAAGAACATTCAGATTAGACATGCAGGACACTATATCTGCACAGCTCAGACTATAGTGGACAACGCCACCGCAGAAGCTGATGTTTTTGTCAGAGGTTTGCCTGGTCCTCCAGGTGGCGTCCGTGTGGAAGAAATCGGCGACACATCAGTTAAAATACGATGGTGTTTGGGATCAGATCACGGTAGTCCTCTCATCCAGCATATCGTGCAAACAAGAGACTTTTACGCCCTTGATCCTGAAGACTGGAAAACCGCAACTACCACTCCTGCGTTTCTGAATGGATCTACAGAGTCAGCCACTGTAGTTGACCTGTACCCCTGGATGCAATATGAGTTCAGAGTGCATGCCATCAATGAATTCGGAGCTGGTGAAAACAGCCGTCCGTCCATTAAAATCAAGACATGGGATGCCAGGCCAACAGTAGCTCCTTCTGACGTCATTGGACAAGTGGGAATAAGCGGAGAGTTGATCGTGACTTGGAATCCTGTGAAACCTCAGTTTTTCTTTGGGAAGAAGTTTGGCTATGTTGTGGCGTTCAAGCAGCATGAGGATTATGAGTGGAAATGGTCAACCGTGGAGGATCCCGAGACCAGACGTTATGTGTACAAAGAGAGCATGACACCAGATACTGAAATACAGATCAAAGTCAGCACCTTCAATAACAAAGGAGAAGGACCCGCAAGTCTTATATCAGTGGTTTACTCACCAAGAATAGCACCGACTGAAGCCCCACTAGATGTGTATGCCCGTCAGGTCACCTCCACAGAGGCTTTAGTCTGGTGGTTACCAGTCTACCAGGCACCACCAATGTGGGTCGACGGATACCAAATACGCTACTGGAGAAAATACGATGATAATGAAGCTGCTGCATCTCGAGTCATTGTTCACAGAACTGTAAACCAAACCCGTCTGGAAAACATGCGACCTGATTCGCATTACCTTATTGAGGTGCGAGCGTTTAATGGAGCAGGACTGGGACCACCAAGCGAACACTGTGAAATGTTTACCAGAAGACCCCCCCCAAGTCGTCGTTTGAGAGTTTACAAGTATGTCAGCTTTACACGCAAATGGCTGTATCTGTATTGGGATCACATCTATAACTACTGGAATGAGTCTTATGTGGAGGGGTACAAGATTTTGTTCCGGAAGGAAGGTGAGCGTTATGGGAAGCTTTACACCACCGGCAGGCACTACATTGACTTCCCCATGCCAGAAACTGGTGATTACGTCATAGAGCTGCGAGCTCGCTGTGAGGGAGGAGATGGACCCATTTCACAGATCAGAGTACAGGGTAAAGCAGCCGTGGGTGTTGAATCTGTCAGTGTGGTCTCTGTCCTGCTGCTGGCTCTTGCCTGGACCACTTTAGGCctgtaggcaaaaaaaaaaaaaaaagactgtcaaaCCTTGCAAAATCCCTCCGAGATGAAAACATATGGTCCGAACAGGACAATCTCATGGTGCAAATGAAGTTTGTTTGAGAGTGTAACGAATATAAAGAATgtgtttgtataaaataaaatagccacaatcaatcaatgaaatggtgttgtaaaataaacatatacagtatagTAGCAGGAGTTGGTGAATTTTTGATGGCTTATTCAGacactgtataatatatttattcattcccAGCAAACAATctttgtttaatagacatctaatacaCATCTAGGTGTAAACAGCTTGGCTAAGACAAGGTTacacttgggctgtcagtgaaaatctaatagacatcgaagaatagcccaaaactagctaTATGAATAACTACTTATTCAttcctgtttatttgatgactagtctagttttggcctattgttagacgtctattagattttcactgacagcccaaatttagccttgttttagtcttgttttagccatgtttagatgtctattagacatctaagaatagtccATAACTAgaatagtcatcaaatagacagattagacagatttatatgtgtagtcattcatttctgtttgtttgatgACTAGTTTGGGCTATTCTTATACAAGACAAATCTTATataagattttcactgacagcccaaatttagccttgttttaaccaagacaactatgtttaggcgtttattagacattttttaaaaacaaaaaatgcttgctgggttcattcatttatttagtttttgtttagttaTGCTTTGGAATTGTGTTATGGGACCTTCATCTGTGCTCCATCAAGTTTCAATGTGAATATTTAACTCTGtactttaacaaagtgacttttatagatttttttttttttgtagtagttTAAAACAATAGATTGTATAAGACTTAATAATGATGCACAATTACAGAAAATTCTAGCCACACATTGTAGATTTTGTAAAATCATTTACATGATCAACAAAGTTTCAAACAATTcaaaatcactttgttaaacttttcaaCATTAACATTTGTTGGAGCAGAGATTAAGTTCGTAAttgaaaagcataaataaaaaacacccaCTAATCACAAAAATCTACAGGAATTACTGTAAATGAGTGGATTGTAAATTAGtgaatgtatttattaaacataacATCTTTTTTAGTCATTTTCCATGTCATCAGCGGCACAACTGCACCATtaaaattgtttagtttttttgtttatgcACTTGGCTTTCAGCTTATTTTTTACGTTTGGTAATATTTATAAAACCACTGTTTGATTTTAAAGTGACTTCCCTAGATTTTTTCCACGTATTTTAAATGATTCACACTGCTATTTTCACCTGTAGCTACTGTACATcagtaaatatt

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-236 Predicted to enable ATP binding activity. Predicted to be active in neuron projection. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy. Orthologous to human CNTN1 (contactin 1).

Ensembl:

ensembl_id ENSDART00000067166

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053587 lncRNA upstream 102161 13631014 ~ 13631677 (+) False XLOC_027194
TCONS_00053583 lncRNA upstream 136411 13593531 ~ 13597427 (+) True XLOC_027192
TCONS_00057669 lncRNA upstream 147655 13584054 ~ 13586183 (+) False XLOC_027191
TCONS_00057134 lncRNA upstream 240482 13489682 ~ 13493356 (+) True XLOC_027189
TCONS_00057668 lncRNA upstream 263941 13468591 ~ 13469897 (+) True XLOC_027188
TCONS_00057135 lncRNA downstream 120214 13876904 ~ 13890091 (+) True XLOC_027198
TCONS_00057136 lncRNA downstream 349825 14106515 ~ 14106866 (+) True XLOC_027200
TCONS_00057670 lncRNA downstream 361353 14118043 ~ 14119559 (+) True XLOC_027201
TCONS_00057137 lncRNA downstream 393370 14150060 ~ 14158028 (+) True XLOC_027202
TCONS_00057671 lncRNA downstream 405653 14162343 ~ 14167862 (+) True XLOC_027203
TCONS_00053589 mRNA upstream 5463 13696537 ~ 13728375 (+) False XLOC_027195
TCONS_00053590 mRNA upstream 5508 13696570 ~ 13728330 (+) False XLOC_027195
TCONS_00053591 mRNA upstream 30232 13696572 ~ 13703606 (+) True XLOC_027195
TCONS_00053588 mRNA upstream 90222 13640903 ~ 13643616 (+) True XLOC_027194
TCONS_00053586 mRNA upstream 90635 13625892 ~ 13643203 (+) False XLOC_027194
TCONS_00053594 mRNA downstream 54121 13810811 ~ 13861445 (+) True XLOC_027197
TCONS_00053595 mRNA downstream 144768 13901458 ~ 13944143 (+) False XLOC_027199
TCONS_00053597 mRNA downstream 152708 13909398 ~ 13962715 (+) False XLOC_027199
TCONS_00053596 mRNA downstream 152708 13909398 ~ 13962715 (+) False XLOC_027199
TCONS_00053598 mRNA downstream 174888 13931578 ~ 13947386 (+) False XLOC_027199
TCONS_00053579 other upstream 149257 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053572 other upstream 302827 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053538 other upstream 1431843 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053520 other upstream 2004708 11724230 ~ 11729130 (+) True XLOC_027159
TCONS_00053515 other upstream 2167682 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053602 other downstream 349821 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053603 other downstream 359676 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053612 other downstream 968384 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053616 other downstream 976293 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053629 other downstream 1317876 15074566 ~ 15074663 (+) False XLOC_027223

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU128295 False 2848 lncRNA 0.50 20 CI01000020 4091205 ~ 4100700 (+)