RNA id: TCONS_00053599


Basic Information

Item Value
RNA id TCONS_00053599
length 596
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_027199
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13901458 ~ 13963440 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAAGTGGAGTTTTGTTTGGCAGCGCGCTCAACCTTTCTCCACGTTTGCTCCTAAATGTGTTTTTCCCTCACGATAATTAAGTATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACC

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-1873 Predicted to be involved in negative regulation of gene expression, epigenetic and protein localization to heterochromatin. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleoplasm. Orthologous to human PPHLN1 (periphilin 1).

Ensembl:

ensembl_id ENSDART00000141742

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057135 lncRNA upstream 41642 13876904 ~ 13890091 (+) True XLOC_027198
TCONS_00053587 lncRNA upstream 300056 13631014 ~ 13631677 (+) False XLOC_027194
TCONS_00053583 lncRNA upstream 334306 13593531 ~ 13597427 (+) True XLOC_027192
TCONS_00057669 lncRNA upstream 345550 13584054 ~ 13586183 (+) False XLOC_027191
TCONS_00057134 lncRNA upstream 438377 13489682 ~ 13493356 (+) True XLOC_027189
TCONS_00057136 lncRNA downstream 162513 14106515 ~ 14106866 (+) True XLOC_027200
TCONS_00057670 lncRNA downstream 174041 14118043 ~ 14119559 (+) True XLOC_027201
TCONS_00057137 lncRNA downstream 206058 14150060 ~ 14158028 (+) True XLOC_027202
TCONS_00057671 lncRNA downstream 218341 14162343 ~ 14167862 (+) True XLOC_027203
TCONS_00053604 lncRNA downstream 230365 14174367 ~ 14176401 (+) True XLOC_027204
TCONS_00053594 mRNA upstream 70288 13810811 ~ 13861445 (+) True XLOC_027197
TCONS_00053593 mRNA upstream 175017 13733838 ~ 13756716 (+) True XLOC_027196
TCONS_00053592 mRNA upstream 175043 13733838 ~ 13756690 (+) False XLOC_027196
TCONS_00053590 mRNA upstream 203403 13696570 ~ 13728330 (+) False XLOC_027195
TCONS_00053601 mRNA downstream 9535 13953537 ~ 13962932 (+) True XLOC_027199
TCONS_00053605 mRNA downstream 399704 14343706 ~ 14348811 (+) True XLOC_027206
TCONS_00053606 mRNA downstream 416370 14360372 ~ 14372843 (+) True XLOC_027207
TCONS_00053608 mRNA downstream 716767 14660769 ~ 14711978 (+) False XLOC_027209
TCONS_00053609 mRNA downstream 716767 14660769 ~ 14711994 (+) False XLOC_027209
TCONS_00053579 other upstream 347152 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053572 other upstream 500722 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053538 other upstream 1629738 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053520 other upstream 2202603 11724230 ~ 11729130 (+) True XLOC_027159
TCONS_00053515 other upstream 2365577 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053602 other downstream 162509 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053603 other downstream 172364 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053612 other downstream 781072 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053616 other downstream 788981 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053629 other downstream 1130564 15074566 ~ 15074663 (+) False XLOC_027223

Expression Profile

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