RNA id: TU2205656



Basic Information


Item Value
RNA id TU2205656
length 296
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1928705
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37324888 ~ 37325183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTACTGACATCTTCTCTATGAACCAGGGTGAGTTACAGTAGTCCTCCACACAGACATCTTCTCTGTGAACCAGGGTGAGTTACAGTAGTCCTCCACACAGACATCTTCTCTATGAACCAGGGTGAGTTACAGTAGTCCTCCACACAGACATCTTCTCTATGAACCAGGGTGAGTTACAGTAGTCCTCCACACAGACATCTTCTCTATGAACCAGGGTGAGTTACAGTAGACCTCTACACAGACATCTTCTCTATGAACCAGGGTGAGTTACAGTAGTCCTCCACACAGACATCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2205655 lncRNA upstream 3682 37321007 ~ 37321206 (+) True G1928704
TU2205650 lncRNA upstream 12216 37310953 ~ 37312672 (+) False G1928700
TU2205649 lncRNA upstream 12216 37311585 ~ 37312672 (+) True G1928700
TU2205615 lncRNA upstream 31139 37292490 ~ 37293749 (+) True LOC110503436
TU2205584 lncRNA upstream 135815 37188706 ~ 37189073 (+) True G1928645
TU2205689 lncRNA downstream 78548 37403731 ~ 37403933 (+) True G1928736
TU2205701 lncRNA downstream 97363 37422546 ~ 37422884 (+) True G1928743
TU2205703 lncRNA downstream 100115 37425298 ~ 37425652 (+) True G1928745
TU2205704 lncRNA downstream 100663 37425846 ~ 37426358 (+) True G1928746
TU2205710 lncRNA downstream 107733 37432916 ~ 37433394 (+) True G1928751
XR_005039422.1 mRNA upstream 33474 37244477 ~ 37291414 (+) True LOC118944105
XM_036961319.1 mRNA upstream 85390 37193636 ~ 37239498 (+) False LOC110503265
XM_036961317.1 mRNA upstream 106818 37193636 ~ 37218070 (+) False LOC110503265
XM_036961318.1 mRNA upstream 106818 37193636 ~ 37218070 (+) False LOC110503265
XR_005039341.1 mRNA upstream 185618 37138638 ~ 37139270 (+) True LOC118944028
XR_005039408.1 mRNA downstream 50408 37375591 ~ 37377209 (+) True LOC118944100
XR_005039399.1 mRNA downstream 52554 37377737 ~ 37380221 (+) True LOC118944094
XM_021581624.2 mRNA downstream 84946 37410129 ~ 37413673 (+) True LOC110503254
XM_036961563.1 mRNA downstream 105888 37431071 ~ 37432117 (+) True LOC110503430
XM_021581623.2 mRNA downstream 115643 37440826 ~ 37442646 (+) True or112-1
TU2205616 other upstream 32472 37291662 ~ 37292416 (+) False LOC110503436
TU2205476 other upstream 121702 37201859 ~ 37203186 (+) True LOC110503265
TU2205555 other upstream 141366 37173606 ~ 37183522 (+) True urb1
TU2205478 other upstream 261344 37058006 ~ 37063544 (+) True LOC110503264
TU2205324 other upstream 662391 36661874 ~ 36662497 (+) True G1928430
TU2205711 other downstream 109720 37434903 ~ 37435441 (+) True G1928752
TU2205719 other downstream 120684 37445867 ~ 37464638 (+) False G1928756
TU2205722 other downstream 128354 37453537 ~ 37464638 (+) True G1928756
TU2205852 other downstream 308032 37633215 ~ 37634159 (+) True G1928851
TU2206018 other downstream 747015 38072198 ~ 38085710 (+) False LOC110511668

Expression Profile