RNA id: TU2205703


Basic Information

Item Value
RNA id TU2205703
length 355
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1928745
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37425298 ~ 37425652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttttgtgcaaagcaatgatgacggcacgtgtttccttgcaggcaaccatggttgacagagtaaggacaatgattccaagcaccaccctccttttgaagcttccagtctgtttttcgaactcaatcagtatgacagagtgatctccagccttgtcctcgtcaacactcacacctgtgttaacgggagaatcactgacatgatgtcagctggtccttttgtggcagggctgaaatgaagtggaaatgttttttggggaatcagttcatttgcatggcaaagggggactttgcaattaattgcaattcatctgatcactcttcataacattctgaagtatatgcaaattgccatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2205701 lncRNA upstream 2414 37422546 ~ 37422884 (+) True G1928743
TU2205689 lncRNA upstream 21365 37403731 ~ 37403933 (+) True G1928736
TU2205656 lncRNA upstream 100115 37324888 ~ 37325183 (+) True G1928705
TU2205655 lncRNA upstream 104092 37321007 ~ 37321206 (+) True G1928704
TU2205650 lncRNA upstream 112626 37310953 ~ 37312672 (+) False G1928700
TU2205704 lncRNA downstream 194 37425846 ~ 37426358 (+) True G1928746
TU2205710 lncRNA downstream 7264 37432916 ~ 37433394 (+) True G1928751
TU2205712 lncRNA downstream 12074 37437726 ~ 37437961 (+) True G1928753
TU2205718 lncRNA downstream 19909 37445561 ~ 37446487 (+) False G1928756
TU2205720 lncRNA downstream 20215 37445867 ~ 37456717 (+) False G1928756
XM_021581624.2 mRNA upstream 11625 37410129 ~ 37413673 (+) True LOC110503254
XR_005039399.1 mRNA upstream 45077 37377737 ~ 37380221 (+) True LOC118944094
XR_005039408.1 mRNA upstream 48089 37375591 ~ 37377209 (+) True LOC118944100
XM_036961694.1 mRNA upstream 49764 37291589 ~ 37375534 (+) False LOC110503436
XM_036961563.1 mRNA downstream 5419 37431071 ~ 37432117 (+) True LOC110503430
XM_021581623.2 mRNA downstream 15174 37440826 ~ 37442646 (+) True or112-1
XM_036961882.1 mRNA downstream 521011 37946663 ~ 37973546 (+) False LOC110511319
XM_036962080.1 mRNA downstream 550993 37976645 ~ 37979130 (+) True LOC118944107
XM_036962127.1 mRNA downstream 614211 38039863 ~ 38121778 (+) False LOC110511668
TU2205616 other upstream 132882 37291662 ~ 37292416 (+) False LOC110503436
TU2205476 other upstream 222112 37201859 ~ 37203186 (+) True LOC110503265
TU2205555 other upstream 241776 37173606 ~ 37183522 (+) True urb1
TU2205478 other upstream 361754 37058006 ~ 37063544 (+) True LOC110503264
TU2205324 other upstream 762801 36661874 ~ 36662497 (+) True G1928430
TU2205711 other downstream 9251 37434903 ~ 37435441 (+) True G1928752
TU2205719 other downstream 20215 37445867 ~ 37464638 (+) False G1928756
TU2205722 other downstream 27885 37453537 ~ 37464638 (+) True G1928756
TU2205852 other downstream 207563 37633215 ~ 37634159 (+) True G1928851
TU2206018 other downstream 646546 38072198 ~ 38085710 (+) False LOC110511668

Expression Profile