RNA id: TCONS_00053608


Basic Information

Item Value
RNA id TCONS_00053608
length 4718
RNA type mRNA
GC content 0.50
exon number 37
gene id XLOC_027209
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14660769 ~ 14713773 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTCTTTAGCCCAGTCAGGTGACATGGCCCTGTCTTTCTGTGGGAACGACAGGGATAGTAACGCCTACAGCGTGGATAATGGAGTCTTGGACAATGGTTGCTTCGTGGATGCCCTCAACCTCGTCCCTCATGTATTTCTTCTCTTCATCACCTTCCCAATTCTCTTCATTGGCTGGGGAAGCCAGAGTTCGAAGGTGCAGATCCACCATAACACCTGGCTGCATTTCCCAGGCCACAACATGCGCTGGATCCTCACCTTCACACTGCTGTTTGTACACGTGTGTGAGATCGCTGAGGGAATCGTCTCCAATACGCAGATGGAGTCTAATCACTTGCACCTCTTCATGCCAGCATTTATGGGCTTTATAGCAGCCACCACATCGGTTGTGTATTACCACAATATTGAAACAGCCAATTTCCCCAAACTCCTGCTGGCCTTATTTATTTACTGGATTCTGGCTTTCATCACAAAGATGATAAAGTTATGGAAGTTTGCCGAGGCGAGCTTGGGGGTACAACATCTCCGCTTCTGTATCACAGCGTTGCTTGTGGTGCTCTACGGCCTACTCATGGCTGTCGAGATCAACGTTATCAGAGTCAGGAAGTATGTATTCTTTGCGAACCCCCAGAGGGTGAAGCCCCCAGAAGACTTGCAGGACTTGGGTGTCCGATTCCTCCAACCCTTCGTCAATCTTCTCTCCAAAGCAACATACTGGTGGATGAACCCACTCATTATTGGAGCCCACAAGAGACCTATTGAGTTGAAGAAAATCGGCAAACTACCTATCGCCATGAGGGCCTTAACCAACTATCTGCGTCTGAAGGACTCCTATGAGGAACAGAGGAACACAGAGGATCCTGAGAAATCGCCATCCATCTGGAAATCCATGTATCGGGCATTCGGGGGTTCAATCCTCCTCAGCAGCACGTTTCGGTATATGGCGGACCTGTTAGGCTTTGCCGGGCCACTTTGCATTTCTGGGATTGTGGAACATCTGCACAACTCAACAGAGATTGACAGAACAAACAAGACAGGGAACATGACTTTCGGGGTGTACTTCATGTCTTCCACTGAGCTGCTGCAGAACACGTCTGTTCTGGCGGTTCTGCTGTTCCTGGCGCTTGTGTTGCAGAGAACATTCCTGCAGGCCTCCTACTACGTCACAATAGAGACGGGCATTAACCTGCGCGGGGCGCTGCTTGCAATGATCTACAATAAAATCCTGCGTCTCTCCACTTCCAACATGTCAATGGGAGAGATGACCCTAGGCCAGATCAACAATCTTGTTGCCATAGAAACCAATCAACTCATGTGGTTTCTCTTCTTATGTCCCAACCTGTGGGCCATGCCAGTTCAGATCATCATGGGAGTGATCCTGCTGTATTATTTGTTGGGCAACAGCGCATTGATAGGGGCCGGCGTTATTTTGCTGCTGGCCCCAGTTCAGTACCTCATTGCTACCAAGTTGGCAGACATTCAGAAAAGCACTCTGGACTACTCGACAGATCGTCTTAAAAAAACCACAGAGATCCTGAAGGGAATAAAACTGCTGAAGCTCTATGCGTGGGAGAACATCTTCTGTGACCGTGTGGAGGAGACCAGAGGAAAAGAGCTGACCAGTCTCAAGACATTCGCTCTCCATACATCAATGTCCATATTTATGAATGCCGCCATTCCCATTGCTGCAGTGTTGGCGACCTTCGTCACACATGCCTACATTGAGGAGGACAGGCTCAGTCCTGCCAAGGCATTTGCCTCTTTGGCTCTATTCCACATCCTGGTCACTCCACTCTTCCTTTTGTCCACGGTTGTCAGGTTTGCCGTCAAGGCTCTTGTCAGTGTACAGAAGCTCAGCGAGTTCCTGCAAAGTGATGAGATTGGAGACGACAGCTGGAGAAATGGAGATATGTGCATGTCTCTTGAAGTCGGCAAGAAATACAAATACCAAGGCGATACGAAGGCTATCAACAGAAAGGGCCGTTATCGTATGGATAACTACGAGCAGCCAGTGCGCAGGCAGCTGCGGCCCTCCGAGACCGAAGATGTGGCTGTACAGGTGAATGATGGCTTCTTCACATGGGGAAGTAATTTGTCCACGCTGTCAGATATCAACATCCGGATTCCTACAGGTCAGCTGACCATGATTGTGGGCCAGGTGGGTTGTGGGAAATCATCCCTGTTATTGGCCATGCTGGGTGAAATGCAGACCATCAGTGGAAAAGTCTACTGGAGCAATAAAAACAGGTACTCTGTGGCCTATGCAACGCAGAAGTCATGGCTGCTTAATGCTACTGTAGAGGAAAACATCACGTTTGGAAGTCCTTTCAATAAGCAGAGATACAAAGCTGTGATTGATGCCTGCTCGCTTCAACCAGATATCGACCTCCTTCCTTTTGGAGACCAGACTGAAATCGGAGAGCGGGGTATTAATCTCAGCGGTGGTCAGAGACAGCGGATCTGTGTGGCCAGAGCTCTGTACCAGAACACCAACATTGTTTTCCTGGATGACCCTTTTTCTGCCTTGGACATCCACCTCAGCGATCATCTGATGCAGGAAGGAATTCTCAAGTTCCTTCAGGACGACAAACGAACAGTAGTCTTGGTCACCCATAAGCTGCAGTACCTCATCCATGCTGACTGGATCATAGCCATGAAGGATGGGTCAGTGCTGAGAGAGGGAACATTGAAGGATATCCAGACTCATGATGTGGAACTCTACGAGCACTGGAAGACCCTGATGAACAGACAAGATCAAGAGCTTGAAAAGGATACCGATCTGGAGAGTCAGACCACTCTGGAGAGGAAGACTTTAAGAAGAGCGTTCTACTCCAGAGAGGCAAAGAACCATGTTGACGATGAGGATGAAGaggaggaggtggaggaggaagaCGACGACAACATGTCTACCACAACCAGCCGGCGTTCAAAGATCCCATGGAAGATGTGCTGCTGCTATCTCTCCTCAGGCGGCTTCCTCATGGTCTTCCTAATGGTGTCGTCCAAGTTGGCCAAGCACTCGGTTATGGTGGCCATCGACTATTGGCTTGCAGCTTGGACATCCTCAAACCCTCACAACCAAAGTTTTGTTAATTCTTCTTTCAATCACACACTGAACGATGACGCCACTCAGATTGCAGAGCATCGTTCCTATGTGCCGGTTTTTATTATCCTGTGCGCAGCGGCAATAGCTCTTTGCCTCATCACTTCTTTAACCGTAGAGTTTCTTGGAGTGGCTGCAGCTACAAACCTTCATCACAATCTACTCAATAAGATCATTCATGCTCCCATCAGATTCTTTGATGTCACCCCGCTCGGGCAAATCCTGAATCGTTTCTCAGCGGACACCAACATCATCGATCAGCACATTCCCCCGACACTAGAGTCTCTCACTCGCTCGACTCTACTCTGTCTATCGGCGATCGGAGTCATTGCTTTTGTTACCCCTGCCTTCCTAATTGCACTGGTGCCCCTCGCTGTGGCCTTCTACTTCATACAGAAATACTTCCGGGTCGCTTCCAAAGACCTGCAAGAACTGGATGACTCAACTCAACTGCCTCTTCTCTGTCATTTCTCTGAAACCGCGGAGGGTCTCACCACCATCCGAGCATTCAGACACGAAGCTCGGTTTAAGCAGCGAATGTTGGAACTGACTGACACCAACAACACGGCGTACTTATTTCTCTCTGCTGCCAACCGGTGGCTGGAGGTCAGAACTGACTACCTAGGCGCTGTGATCGTCCTGACTGCGGCTGTAGCAGCGATCTGGAGCACATCCCCATCAGGTCTGGTCGGACTTGGTCTAACATACGCCCTCACTTTGACAAACTACCTGAACTGGGTGGTGAGGAATCTGGCAGACCTGGAGGTCCAGATGGCCGCGGTGAAGAAAGTCAACAGCTTCCTGAGCACGGAATCTGAGAACTACGAAGGATCCATGGATGTGTCACAGGTACCTGAAGACTGGCCTCAGCATGGTGAAATAACTATCCATGATCTGTGTGTGCGTTACGACTCCATGCTCAAACCAGTCCTCAAACACGTCAATGCCCACATCAACCCTGGCCAGAAGGTGGGCATCTGTGGGCGAACGGGCAGTGGAaaatcctctctctctctggcttTCTTCAACATGGTCGATGTTTTTGAAGggAAGATTGTCATTGATGGCATCGACATCTGCAAGCTTCCTCTACAAACTCTAAGATCTCGCCTGTCAATCATCCTCCAGGACCCAGTGCTGTTCAGCGGCTCCATCCGGTTAAATCTAGACCCCGAGCGCACATGCACCGACGACCGGCTTTGGGAAGCTCTAGAAATCGCTCAGCTGAAGAATATGGTGAAAGCTCTTCCAGGAGGATTGGACGCTGTGGTGACCGAAGGAGGAGAGAACTTCAGTGTGGGACAGAGGCAGCTATTTTGTCTCGCCCGGGCCTTTGTTCGCAAGAGCAGCATCCTAATAATGGACGAGGCCACAGCTTCTATTGACATGGCCACGGAAAATATTCTTCAGAAAGTGGTGATGACTGCGTTTGCTGATCGGACGGTCGTCACTATAGCCCACCTGGTTTCCTCCATCTTGGAGGCGGAGCAGGTGCTGGTGTTCTCCTCTGGGATTCTGGTCGAGAACGACAGCGCTATCAACCTCCTGGCACAGGAGGACAGTCTCTTCGGCATCTTAGTGCGGACGCACAAGTAGCATGCTCTGTCTCCGCCCAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008281 sulfonylurea receptor activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko02000 Transporters
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050517-23 Enables ATP-activated inward rectifier potassium channel activity. Acts upstream of or within regulation of heart contraction. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in heart. Used to study hypertrichotic osteochondrodysplasia Cantu type. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1O; familial atrial fibrillation; and hypertrichotic osteochondrodysplasia Cantu type. Orthologous to human ABCC9 (ATP binding cassette subfamily C member 9).

Ensembl:

ensembl_id ENSDART00000168152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053607 lncRNA upstream 252471 14399472 ~ 14408298 (+) True XLOC_027208
TCONS_00057672 lncRNA upstream 472040 14185166 ~ 14188729 (+) True XLOC_027205
TCONS_00053604 lncRNA upstream 484368 14174367 ~ 14176401 (+) True XLOC_027204
TCONS_00057671 lncRNA upstream 492907 14162343 ~ 14167862 (+) True XLOC_027203
TCONS_00057137 lncRNA upstream 502741 14150060 ~ 14158028 (+) True XLOC_027202
TCONS_00053614 lncRNA downstream 15093 14727071 ~ 14734283 (+) False XLOC_027212
TCONS_00057673 lncRNA downstream 56004 14767982 ~ 14770585 (+) True XLOC_027214
TCONS_00057138 lncRNA downstream 219361 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00053627 lncRNA downstream 294288 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057674 lncRNA downstream 359496 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00053606 mRNA upstream 287926 14360372 ~ 14372843 (+) True XLOC_027207
TCONS_00053605 mRNA upstream 311958 14343706 ~ 14348811 (+) True XLOC_027206
TCONS_00053600 mRNA upstream 697329 13931747 ~ 13963440 (+) False XLOC_027199
TCONS_00053601 mRNA upstream 697837 13953537 ~ 13962932 (+) True XLOC_027199
TCONS_00053598 mRNA upstream 713383 13931578 ~ 13947386 (+) False XLOC_027199
TCONS_00053611 mRNA downstream 5524 14717502 ~ 14719854 (+) True XLOC_027210
TCONS_00053613 mRNA downstream 15040 14727018 ~ 14736600 (+) False XLOC_027212
TCONS_00053615 mRNA downstream 15234 14727212 ~ 14737102 (+) True XLOC_027212
TCONS_00053617 mRNA downstream 114321 14826299 ~ 14863510 (+) True XLOC_027215
TCONS_00053618 mRNA downstream 187742 14899720 ~ 14910386 (+) False XLOC_027216
TCONS_00053603 other upstream 541210 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053602 other upstream 551959 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053579 other upstream 1076188 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053572 other upstream 1229758 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053538 other upstream 2358774 12292285 ~ 12301995 (+) False XLOC_027168
TCONS_00053612 other downstream 13096 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053616 other downstream 21005 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053629 other downstream 362588 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053630 other downstream 362737 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053631 other downstream 363687 15075665 ~ 15075732 (+) True XLOC_027223

Expression Profile

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