RNA id: TU2205930


Basic Information

Item Value
RNA id TU2205930
length 3500
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1928915
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37870942 ~ 37877986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACGCATGTCATAAGGCAGGGCGTACCAATCCTACTAATACTGCCACAGTTACTCCTCCCTCTGACAGCACAGAGCATGTGATGCACACACaacgctacacacacacgcacacaacgctacacacacacacagcgctacacacgcacgcacacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacaatgttataACAAGCCGGACAGAATGATGAACAACCTACGACAGGGGAACAGAAACAAACTGACAGCACACAGAATAACAGAATAACATAGTAGCAGTAATAAAGCTAAATAAACAGGTGAAAGTGATGGACGGTAAAGACGAAACATTAAGGACCATGGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGAAGGCCATCGACCAATCAACAGTCTCTTTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAACAAACAGTTTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCAACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAAAAAACAGACTCTCTGGAGGCCATTGACCAATAAACAGTCTCTCCTTAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGTAGGCCATCGACCAATAAACAGTCTGTCTGGAGGCCATCGACCCGTAACAGTCTCTCTAGCCAGGGAGGCTCGCTGTCGTAACACTTCTCAAGCCTCTTCTGGGAAACACCTGGTCCAGCCCAATGATTCACCCACATAAACAAGGTCCTTAGGCTTTTGTGCAAACGTGTGGTGTCCTCGTACTAATGTCTGGCACAAGTGAGTTCTGGACAGGCACTGTTGGTTCTAAAAAAAAAAGTCCTGGGCCCCATCCTTACTAGAAAATAAATGTGTTCCCCTTAAAATGAAGGATTTCATTCTGATCCTGTTGGTGTTCTCTGGGTCCAATGATGTCCTCCTGTACCTCTTCTGGGGTATCGGATAACCCTTAACCCCTGTCCTCAAAGTCTCTCCCATCACTACCCCACATGCCACTGCACCTCTAAGCCCctacagtaatacactatacagcTCTGCTACATGTAACACAATAAATTAATTCACTCCTTGAGataaatgtattatttaaatGTAAAGCCTATATTCATCCAGGTTATAGCgtgtaaaatgtttttaaaaaaaagcagAAATGTCCATAGTTCTGGTCTTGTTCCATCAGGGAGGAGGCTGGTTCTGTCATCGATCACAAATGATCATCTTCTCATCTCTTGTTCCACTCCTCCATCCCAGAGTCAATTCTTCTATCTCGTCTCTTGTTCCTCTCTgagttctctctcctccctccattccttctccGTGTGTCCATATCGGTGTGTGTGAGGAAAAAGAAGAGGCAGAGATAGAGGAGataggagagattagaggagattagaggagattagaggagatgagaggagatacgggagatagaggagataggaggagataggagatagaggagatgggggagataataggagattagaggagattagaggagataATAGGAGATAAGAGGAGATACGGGAGATAGAGGAGATAGGAGGAGATATGACCGATGTCTTCTAGCTGCACTTACAGCTCTCCACAATCATGTTGGACAACTGTTCCACctgaaacaaacaaacacaccacaccactgttagtgactacacacccacaccactgttagtgactacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacaccaacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccccaccactgttagtgactacaccccaacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacaccccaacaccactgttagtgactacacccccaccactgttagtgactacacacccacaccactgttagtgactacacccacaccactgttagtgactacaccaacaccactgttagtgactacacccaaacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactaccaacaccactgttagtgactacacccaaacaccactgttagtgactacacacccacaccactgttagtgactaccaacaccactgttagtgactacacaccacaccactgttagtgactacacacccaacaccactgttagtgactaccaacaccactgttagtgactaccaacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccaacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccaacaccactgttagtgactacacacccccaccactgttagtgactacaccccaacaccactgttagtgactacaccccaacaccactgttagtgactacacacccacaccactgttagtgactacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2205927 lncRNA upstream 24996 37845515 ~ 37845946 (+) True G1928914
TU2205918 lncRNA upstream 54098 37816540 ~ 37816844 (+) True G1928905
TU2205899 lncRNA upstream 166878 37703280 ~ 37704064 (+) False G1928889
TU2205900 lncRNA upstream 166878 37703417 ~ 37704064 (+) True G1928889
TU2205885 lncRNA upstream 205023 37664533 ~ 37665919 (+) True G1928876
TU2205972 lncRNA downstream 96957 37971520 ~ 37971881 (+) False LOC110511319
TU2205969 lncRNA downstream 98095 37972658 ~ 37973429 (+) True LOC110511319
TU2205982 lncRNA downstream 106849 37981412 ~ 37981631 (+) True G1928962
TU2206007 lncRNA downstream 147610 38022173 ~ 38023865 (+) True G1928979
TU2206025 lncRNA downstream 189743 38064306 ~ 38064621 (+) True G1928994
XM_021581623.2 mRNA upstream 428296 37440826 ~ 37442646 (+) True or112-1
XM_036961563.1 mRNA upstream 438825 37431071 ~ 37432117 (+) True LOC110503430
XM_021581624.2 mRNA upstream 457269 37410129 ~ 37413673 (+) True LOC110503254
XR_005039399.1 mRNA upstream 490721 37377737 ~ 37380221 (+) True LOC118944094
XR_005039408.1 mRNA upstream 493733 37375591 ~ 37377209 (+) True LOC118944100
XM_036961882.1 mRNA downstream 72100 37946663 ~ 37973546 (+) False LOC110511319
XM_036962080.1 mRNA downstream 102082 37976645 ~ 37979130 (+) True LOC118944107
XM_036962127.1 mRNA downstream 165300 38039863 ~ 38121778 (+) False LOC110511668
XM_036961232.1 mRNA downstream 588872 38463435 ~ 38523166 (+) False rasgrp4
XM_036961233.1 mRNA downstream 616325 38490888 ~ 38523166 (+) True rasgrp4
TU2205852 other upstream 236783 37633215 ~ 37634159 (+) True G1928851
TU2205719 other upstream 406304 37445867 ~ 37464638 (+) False G1928756
TU2205722 other upstream 406304 37453537 ~ 37464638 (+) True G1928756
TU2205711 other upstream 435501 37434903 ~ 37435441 (+) True G1928752
TU2205616 other upstream 578526 37291662 ~ 37292416 (+) False LOC110503436
TU2206018 other downstream 197635 38072198 ~ 38085710 (+) False LOC110511668
TU2206015 other downstream 217852 38092415 ~ 38107226 (+) True LOC110511668
TU2206073 other downstream 323335 38197898 ~ 38198524 (+) True G1929037
TU2206278 other downstream 635283 38509846 ~ 38513105 (+) True G1929196
TU2206306 other downstream 715618 38590181 ~ 38635392 (+) True ppp1r13l

Expression Profile