RNA id: TU2206014


Basic Information

Item Value
RNA id TU2206014
length 985
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1928984
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38124724 ~ 38125962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaAGCGAAGACTTACCTCAAGTGTAAACGATGCATGTGTCGTTTACATTTCTATCGCGTACTCTGTAACGCTTCTTCAGCTtcccagattgaatagagccccctGTGTAGGCCTTTTACCTTGTCAACGCAACAGTCTGCATGGACCACTAAGCACCACGTCAGACGGACATTTCATAGTAGGAGGAGCCTTCTAGCATTTATCTACATGTGGTTCCGCGTCAGTAAAGACGTGATGTACATGATCCTGCTCTATCTTTGGTACTTTACATTCTAACTCAATGGAGACGGCTGGTACGGCAGTGTACAGGTAGACAGCTGGTACAGTAGTGCACAGGTAGACAGCTGGTACGGTAGTGCACAGGTAGACAGCTGGTACAGTAGTGCACAGGTAGACAGCTGGTATGGTAGTGCACAGGTAGACAGCTGGTACGGTGGTGTATTAGAATGAACTCACGTGAATCCTGTATTGATGAGGCTTTTCCTCTCCATATATCCTTTATTccaatatgttgttcagtacacCATAACGCACATACATTATGCTCAATTATGCTTTTACCCCACAACAATGTTATAAATGAGTTAAACTTATTTTTCACAATGTGAATTTGTAAATACttaatttttttgtaattttttttattttttacaactaACCAAAATTGTAATTGGAAAATATTAAGACAAAAGAAAAGTATAATTTTGTAAGTACAGTATGTAGCAATTATATAGCGATATTCCCCCAAGGTACCGATATGGAACATCCCCTATCCTGACTTACAGAGTCTTAACATATCATGCAGTCAGTAGAGACGGTGTTCTGTGATCTGATTGGTTTATAAATGATGCTCATTGGTTTCCATGTAATTGACGGGGAGATGAAGAAGATGTTACAGTGACAGTCACATATTATTGTCACTTCCATGGTGTTTAAAAGAAACAGATTTTGATACTTATTTTGTATGAAATAAAATGCGTACAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206043 lncRNA upstream 20266 38103237 ~ 38104458 (+) True G1929011
TU2206037 lncRNA upstream 32609 38091108 ~ 38092115 (+) False G1929006
TU2206038 lncRNA upstream 32609 38091108 ~ 38092115 (+) True G1929006
TU2206036 lncRNA upstream 32938 38090744 ~ 38091786 (+) True G1929005
TU2206034 lncRNA upstream 43659 38080756 ~ 38081065 (+) True G1929003
TU2206016 lncRNA downstream 58219 38184181 ~ 38191450 (+) True G1928986
TU2206059 lncRNA downstream 66461 38192423 ~ 38193162 (+) True G1929025
TU2206086 lncRNA downstream 76541 38202503 ~ 38207301 (+) False G1929039
TU2206087 lncRNA downstream 76541 38202503 ~ 38207301 (+) False G1929039
TU2206088 lncRNA downstream 76541 38202503 ~ 38207301 (+) False G1929039
XM_036962127.1 mRNA upstream 2946 38039863 ~ 38121778 (+) False LOC110511668
XM_036962080.1 mRNA upstream 145594 37976645 ~ 37979130 (+) True LOC118944107
XM_036961882.1 mRNA upstream 151178 37946663 ~ 37973546 (+) False LOC110511319
XM_021581623.2 mRNA upstream 682078 37440826 ~ 37442646 (+) True or112-1
XM_036961563.1 mRNA upstream 692607 37431071 ~ 37432117 (+) True LOC110503430
XM_036961232.1 mRNA downstream 337473 38463435 ~ 38523166 (+) False rasgrp4
XM_036961233.1 mRNA downstream 364926 38490888 ~ 38523166 (+) True rasgrp4
XR_002470453.2 mRNA downstream 400922 38526884 ~ 38527767 (+) True LOC110503272
XM_036961980.1 mRNA downstream 464184 38590146 ~ 38653011 (+) False ppp1r13l
XM_036961981.1 mRNA downstream 464197 38590159 ~ 38653011 (+) False ppp1r13l
TU2206015 other upstream 17498 38092415 ~ 38107226 (+) True LOC110511668
TU2206018 other upstream 39014 38072198 ~ 38085710 (+) False LOC110511668
TU2205852 other upstream 490565 37633215 ~ 37634159 (+) True G1928851
TU2205719 other upstream 660086 37445867 ~ 37464638 (+) False G1928756
TU2206073 other downstream 71936 38197898 ~ 38198524 (+) True G1929037
TU2206278 other downstream 383884 38509846 ~ 38513105 (+) True G1929196
TU2206306 other downstream 464219 38590181 ~ 38635392 (+) True ppp1r13l
TU2206305 other downstream 805877 38931839 ~ 38932549 (+) True bicra
TU2206559 other downstream 894871 39020833 ~ 39048693 (+) True spred3

Expression Profile