RNA id: TCONS_00053614


Basic Information

Item Value
RNA id TCONS_00053614
length 1187
lncRNA type retained_intron
GC content 0.47
exon number 6
gene id XLOC_027212
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14727018 ~ 14737102 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATGGTTTATTTGAGAAGATAATTACATCAGAATGAAATAAACGCCCTGTAGTTCGAGTCTGAATAATTGGAGGAACCTTTTTTAATCAACCCAATCGTTCGCACTACGTGTGGAAATATTAATTGGCTGGAAACAGTAATGGACGCAGTAAATGAAAACGGTAAACGCGCTATGAAGGACGACAGTCATGGGAACAGTACCAGCCCAAAACGAAGAAAATCCAGACACATCTCTGCTCTTATTCTGGCCCGTGGAGGGAGTAAAGGAATCCCCCTGAAGAACATTAAGATGCTTGCAGGGGTTCCCCTGATCGGATGGGTGATCAGAGCGGCTGTGGACTCCAATGTCTTTAACAGGTCGTGCTGTGTGACGTCAGCATCCATATATATATCTGTATGGTTGCTTTTGAAATATTTGCAGTATTGTCTCTTATGCCTGCttttgcagtgtttgggtgtctACTGATCACGAAGAGATCGCCAAAGTGGCCTTGGCTTGGGGTGCAAAGGTGCACAAGAGGAGCCCAGAAGTGTCCCAGGACTCCTCCAGCTCACTGGACACCATTCGGGAGTTCAGCAGACAGCACCGAGAGGTGGATGTTATCTGTAACATCCAGGCCACGTCTCCGTGTTTGCACCCAAAACATCTCACAGAGGCTGTGGAACTCATAACGAAACAAGGGTACGATTCAGTCTTCTCTGTGGTCCGCAGGCACAATTTTCGATGGAAAGAGGTTGAGAAAGGAGGAGATTGCAGCACTGAACCGATGAACCTGAACCCAGCTTGCAGGCCGCGGCGTCAGGACTGGAGTGGAGAACTGTGTGAAAATGGCTCTTTTTACTTCGCAAAGAAAGAGCTCATAGAACAAGGGCTTCTTCAGGGTGGAAAGAAAACATACTATGAAATGAAGCCTGAGTACAGCGTGGATATTGATGTGGACATAGACTGGCCTGTTGCTGAGCAAAGAGTTCTGAGGTTTGGATACTTTGGGAAGGACAAACCTGAAGTTGTGAGGCTCTTGCTGTGTAACGTGTCTGGATGTCTGACAGACGGTCAGATCTACACCTCAGCGAGTGGAGAGGAGATGGTGTCCATCAACATCAGAGACCAGATCGGCATCAGCATGCTTAAGAAAGAAGGAGTGAAGGTGATTTTACTTGAAACATACCCCATAGCAAAAGCAT

Function

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-277 Enables N-acylneuraminate cytidylyltransferase activity. Predicted to be involved in N-acetylneuraminate metabolic process. Located in nucleus. Is expressed in several structures, including axial mesoderm; central nervous system; liver; notochord; and pleuroperitoneal region. Orthologous to human CMAS (cytidine monophosphate N-acetylneuraminic acid synthetase).

Ensembl:

ensembl_id ENSDART00000131666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053607 lncRNA upstream 318773 14399472 ~ 14408298 (+) True XLOC_027208
TCONS_00057672 lncRNA upstream 538342 14185166 ~ 14188729 (+) True XLOC_027205
TCONS_00053604 lncRNA upstream 550670 14174367 ~ 14176401 (+) True XLOC_027204
TCONS_00057671 lncRNA upstream 559209 14162343 ~ 14167862 (+) True XLOC_027203
TCONS_00057137 lncRNA upstream 569043 14150060 ~ 14158028 (+) True XLOC_027202
TCONS_00057673 lncRNA downstream 33699 14767982 ~ 14770585 (+) True XLOC_027214
TCONS_00057138 lncRNA downstream 197056 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00053627 lncRNA downstream 271983 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057674 lncRNA downstream 337191 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00057675 lncRNA downstream 370411 15104694 ~ 15114467 (+) True XLOC_027224
TCONS_00053611 mRNA upstream 7217 14717502 ~ 14719854 (+) True XLOC_027210
TCONS_00053610 mRNA upstream 13298 14660793 ~ 14713773 (+) True XLOC_027209
TCONS_00053609 mRNA upstream 15077 14660769 ~ 14711994 (+) False XLOC_027209
TCONS_00053608 mRNA upstream 15093 14660769 ~ 14711978 (+) False XLOC_027209
TCONS_00053606 mRNA upstream 354228 14360372 ~ 14372843 (+) True XLOC_027207
TCONS_00053617 mRNA downstream 92016 14826299 ~ 14863510 (+) True XLOC_027215
TCONS_00053618 mRNA downstream 165437 14899720 ~ 14910386 (+) False XLOC_027216
TCONS_00053619 mRNA downstream 165759 14900042 ~ 14906516 (+) True XLOC_027216
TCONS_00053620 mRNA downstream 192665 14926948 ~ 14932359 (+) False XLOC_027217
TCONS_00053621 mRNA downstream 223077 14957360 ~ 14968073 (+) False XLOC_027218
TCONS_00053612 other upstream 1857 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053603 other upstream 607512 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053602 other upstream 618261 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053579 other upstream 1142490 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053572 other upstream 1296060 13429005 ~ 13431011 (+) True XLOC_027186
TCONS_00053629 other downstream 340283 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053630 other downstream 340432 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053631 other downstream 341382 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053633 other downstream 484961 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053646 other downstream 1254104 15988387 ~ 15991090 (+) True XLOC_027234

Expression Profile

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