RNA id: TU2206298


Basic Information

Item Value
RNA id TU2206298
length 1515
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1929213
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38573794 ~ 38575366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATACAgcaatttttttatatatatttttttacacatgtCACAGTACATCACCAACTAGGGAAGGAATTCACACAGTGAGTCAAGACAATGATACAGAGTTGTGACTAGATCAGCGTTTCCCaaggtcctcgggaccccaatgTGTGCACATTTGAGTTTTTGCCCCCTAACACGACACagttgattcaaatgatcaaagcttgatgatttgttgattatttgaatcagctgtgtagatctatggcaacaacaaaaaatgagtTTGGGAAAACCTTGGGACAAGATGGAGTACAGCCACAACCAGGAAGTGACTTTTCATAGCAGGCTAGGAGAGCATTTTAGCTAAGTCAGAACCATAGTAAAATAAGGTGGGCAACAATTGATGTAGTTAAATGTACAAATTTAAATTTTTCAAGTCAGCAAATATTATTTTCAGCAAATATTATTGCCAGTTAGTTTCCCTGTGTCATACTGTCGTGCAAGGAGTTATAAAACACCCTCCCTACCTGGGTCCAAGCACCcatcagtggggggggggggggggggggggtatctgtacttttatcatttatatatttgactttttactccactacattcctaatgaaaattATGTAatttttactccactacattttccctgacacccaaaagtacattttgaatgcttagcaggacagaaaatggtccaagTCACATACTTATCAagcgaacatccctggtcatctctactgcctctgatctggaggactcactaaatagagaacatccctggtcatccctactgcctctgatctgacagactcactaaacagagaacattcctggttatccttactgcctctgatctggaggactcactaaatagagaacatccctggtcctctactggctctgatctggtggactcactaaacagagaacattcctggttatccttactgcctctgatctggtggacacactaaacagagaacatccctggtcatccctactgcctctgatctgacagactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacacaactgCGTTGTttttaaatcatgtctgagtgttggaatgtgaCCCTTGCTATGCgaaaacaaaaaacaagaaaattgtgccatctggttttcttaatataaggaatttttaattattcatacttttgatacttaagtatatttaaaaccaaatacttttactcaagtagtaattttctattaaaatATCTTCACTTTTACTACAGAATGATATTTGAGTAGTTTTTCCaccccatatggcAGCGTTTCCTCCAGTCCTACCACagaacacattgttgttgtagccccAAACAAGCACACCCGATTCCACTTCATCCACAATTAGTTGAATCAGAAGAATTTGTCATCTGggccaacaacaaaaaatgagtgggggtaccggaggactggagttgggctgttgggggtactggaagactggagttgggctgttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206252 lncRNA upstream 3059 38569877 ~ 38570735 (+) True G1929174
TU2206250 lncRNA upstream 3093 38569877 ~ 38570701 (+) False G1929174
TU2206258 lncRNA upstream 7866 38564807 ~ 38565928 (+) True G1929177
TU2206283 lncRNA upstream 26993 38545676 ~ 38546801 (+) True G1929200
TU2206256 lncRNA upstream 49316 38523951 ~ 38524478 (+) True G1929175
TU2206348 lncRNA downstream 31245 38606611 ~ 38606996 (+) True G1929257
TU2206357 lncRNA downstream 46304 38621670 ~ 38621940 (+) True G1929262
TU2206361 lncRNA downstream 46825 38622191 ~ 38625067 (+) False G1929263
TU2206362 lncRNA downstream 46825 38622191 ~ 38625067 (+) False G1929263
TU2206363 lncRNA downstream 46825 38622191 ~ 38625067 (+) False G1929263
XR_002470453.2 mRNA upstream 46027 38526884 ~ 38527767 (+) True LOC110503272
XM_036961232.1 mRNA upstream 50628 38463435 ~ 38523166 (+) False rasgrp4
XM_036961233.1 mRNA upstream 50628 38490888 ~ 38523166 (+) True rasgrp4
XM_036962127.1 mRNA upstream 452016 38039863 ~ 38121778 (+) False LOC110511668
XM_036962080.1 mRNA upstream 594664 37976645 ~ 37979130 (+) True LOC118944107
XM_036961980.1 mRNA downstream 14780 38590146 ~ 38653011 (+) False ppp1r13l
XM_036961981.1 mRNA downstream 14793 38590159 ~ 38653011 (+) False ppp1r13l
XM_036961984.1 mRNA downstream 14793 38590159 ~ 38653011 (+) False ppp1r13l
XR_005039418.1 mRNA downstream 145416 38720782 ~ 38736584 (+) False LOC118944104
XM_021581659.2 mRNA downstream 162103 38737469 ~ 38757769 (+) True tmem91
TU2206278 other upstream 60689 38509846 ~ 38513105 (+) True G1929196
TU2206073 other upstream 375270 38197898 ~ 38198524 (+) True G1929037
TU2206015 other upstream 466568 38092415 ~ 38107226 (+) True LOC110511668
TU2206018 other upstream 488084 38072198 ~ 38085710 (+) False LOC110511668
TU2205852 other upstream 939635 37633215 ~ 37634159 (+) True G1928851
TU2206306 other downstream 14815 38590181 ~ 38635392 (+) True ppp1r13l
TU2206305 other downstream 356473 38931839 ~ 38932549 (+) True bicra
TU2206559 other downstream 445467 39020833 ~ 39048693 (+) True spred3
TU2206900 other downstream 972446 39547812 ~ 39549780 (+) True G1929664
TU2207080 other downstream 1298912 39874278 ~ 39877275 (+) True G1929808

Expression Profile