RNA id: TCONS_00057673


Basic Information

Item Value
RNA id TCONS_00057673
length 2604
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_027214
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14767982 ~ 14770585 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAGGAGGGGAAAAAAGAGCCATTTGCACCTCCACAAATGAGAGTACTCCAGGAAGTCCATTAATTGAAGCGGTTCAGGGAAAGCAGCTGCTTATCGGAGCATTTAAAGGCAAGTGAGCGAGTCGGAGCGGCTTCAGCAAGATAAATGTGAATTTACTTGCAGAGCCTGACAGCTTTCGACCCGGTCCTGGATTCGGACTGTTTAGAAATTCACTAGAGATTCTTGGGCCTCAGCTGAGAGCTGAGTACAATTTTtccttaattatatattttttcttctttcaaGGCTGTCTTACACATTTAGCAAGTTTAAGAATCCAACGAACCATACACTGATAAAGCACAATTTGAATTGGGCTGAGGATCAAATGTGCTGAAGCATGGCAAACTATTGCCTTTTGTCCTGTGAACAAGCTTTTGAAACCATCAAATATTAAatacttttctctctgctaccggACCTAGATACTCATACTGTAAGTACAACATTTTAAGGTTTATTCCTAAAAAAAAGCAGTCAAATAGGTGGTTAAAAAaagtgtataataatattaaaagaaacTTTTCATTCTTCTATTACACATTTTTCAATTTACACAGTCACATTTGGGAATCTTTACCATTAATTGgcattaatttgatcatttattttatttcaaggttTTCCCAGCAGCACACAACGTCACAAGACGTTATCATTAGGTTCGATTTtggttgtgatgtcaagtgaccagAATTCAGCGTCAAAGTACAATACTTTGAactccaataatgacgtcaaatgatgttgatatttggttgatttcaagttgtgtgaccaaaatccaacgtcaatcttaaaccaacgtcatactgaTGTGAAATAcggacatttatttgtcaggtatggcaaccaaaatccaacatctgatagacatcatagtggtaacgtccacacaacgtcaagctgtaaaatcattaaatgttgatatttgggtgactttaagttgtgttggaaagtcaccaaaatccaatgtcgggTATTAAACCAATGTTATAATGACGTGAAACACTGACATTAATTCATcaagttatggcaaccaaaatccaacgtttgatagacgtcatagtggtaacatccacacagtGCCAAGCTGTGACACCATAAGACGtttatatttgcttaattttaggttgtgttggacagTTAGCAAAAATCTAATGTCGTGCCAACGTATTAACCCAACCTCATATTGACGTGAaatttggcaaccaaaatccatcgTCTGACAGACATCATCGTGGTAACATCCACATAAAGTCAAGCTgtacatcattagacattgatatttggttgattttaggtttatACTTTGGCTTGACATTGGATTCTGACATCAAACcgatttttatttcaaaacaaaatgcaaagtccCCATGATGttgttggggtacaacgttaatctgatgtcatgttgatgtcctgtgccggctgtttttattttttattttttatctaaaaaagACTTTTCAGTTAAAAATTGTTTATTACATTTGAGTTCATGTTCATGATCCTAAATGAGAAAGCACTGAatgctgcagaaaaaaaaaactttgcaaacaaaaatatttggCTTAGTTCAGTGTGCAGCCAGCTCATTAGCAAGTctagaaaattaatgaaataaaaccaACAGTTAAGGACATAAGAAAAGGAGGGGGAGTGAGAGCATTACACAAATAGCTAAAGGTTTGTGTTTTTCCTGCATTTCTAGGCTTGAacaacttaaagaaaaaaaatcacgatGTGACTGCCCTGAACTGAGCTGTCTGTACCAACTATACCAACAAATCCCCTCAGAAAAACACACAAGAAACTCAGATGCatggaaaatattcaaaaatattagTTTGGTTTCATCATTTGTTTATCCTCATTTTGCTAGTCGAACAACAGATATTTCTTCACTCGTGATCAAGTCTAAAGGTTTCTGCTGCAGCTCCTGACATTTAAGCCTGAATATTTCATCATTATGATGCATTATTGGGTAAAAAATGTCAGTGTGATCCTGCCCACCACACCACAGTCATGCAGTTCAATCTTCAGCAGGAGAATCAGACAGGACCACAGGGCTTTCTGTCAGCCATCTGGATTATTTTACGAGAAACAGGAGAGGTTTGTCAGCTCACTCTTCAGTTCAGTGTAATGGCAAGCAGGAGGCCAGTCTTAAATGTGATCGCAAATCATTCACTGTTTATATGCAAACTAAGTCTGCATCTGATCAACAGGATGATAAAGGTATATGGTTTTATTTTAGTCGCACAATTCATGAACTTTAATTATTCTGTTCTGTATATCATTAGTGGTTTTAGGGAATTGTGAAATTGTTAGAATGATAATGCTTGTCTAAAAAAAGCAAAATGCTTCACAAAAAAATGTGTCACTTtcacaaaaacactttaaaaatgagctttttaggctatttgaaaataaaatttagCAAAACTTCAAGTCACATGGTTTAAATAAAGGTCAAATGTTAAATGAAAACACCAGTGCTCaacttgtaaatgaataatttccaGAATAAAACCAGGAAATAAAGGTTATCGTGACCAACTTC

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0060841 venous blood vessel development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053614 lncRNA upstream 33699 14727071 ~ 14734283 (+) False XLOC_027212
TCONS_00053607 lncRNA upstream 359684 14399472 ~ 14408298 (+) True XLOC_027208
TCONS_00057672 lncRNA upstream 579253 14185166 ~ 14188729 (+) True XLOC_027205
TCONS_00053604 lncRNA upstream 591581 14174367 ~ 14176401 (+) True XLOC_027204
TCONS_00057671 lncRNA upstream 600120 14162343 ~ 14167862 (+) True XLOC_027203
TCONS_00057138 lncRNA downstream 160754 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00053627 lncRNA downstream 235681 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057674 lncRNA downstream 300889 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00057675 lncRNA downstream 334109 15104694 ~ 15114467 (+) True XLOC_027224
TCONS_00057676 lncRNA downstream 412920 15183505 ~ 15240713 (+) False XLOC_027225
TCONS_00053615 mRNA upstream 30880 14727212 ~ 14737102 (+) True XLOC_027212
TCONS_00053613 mRNA upstream 31382 14727018 ~ 14736600 (+) False XLOC_027212
TCONS_00053611 mRNA upstream 48128 14717502 ~ 14719854 (+) True XLOC_027210
TCONS_00053610 mRNA upstream 54209 14660793 ~ 14713773 (+) True XLOC_027209
TCONS_00053609 mRNA upstream 55988 14660769 ~ 14711994 (+) False XLOC_027209
TCONS_00053617 mRNA downstream 55714 14826299 ~ 14863510 (+) True XLOC_027215
TCONS_00053618 mRNA downstream 129135 14899720 ~ 14910386 (+) False XLOC_027216
TCONS_00053619 mRNA downstream 129457 14900042 ~ 14906516 (+) True XLOC_027216
TCONS_00053620 mRNA downstream 156363 14926948 ~ 14932359 (+) False XLOC_027217
TCONS_00053621 mRNA downstream 186775 14957360 ~ 14968073 (+) False XLOC_027218
TCONS_00053616 other upstream 34859 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053612 other upstream 42768 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053603 other upstream 648423 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053602 other upstream 659172 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053579 other upstream 1183401 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053629 other downstream 303981 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053630 other downstream 304130 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053631 other downstream 305080 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053633 other downstream 448659 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053646 other downstream 1217802 15988387 ~ 15991090 (+) True XLOC_027234

Expression Profile

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