RNA id: TCONS_00053622


Basic Information

Item Value
RNA id TCONS_00053622
length 1650
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_027218
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14957360 ~ 14968641 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTTCAGTGACTGCGCTTATCAGGAAatgccacataaaacaacaagcACCGATTCCGCAAGATGCGCTCCTGACATTTTGCTCAAACATCGAGAGACCTCGAGTTGATTCACCAGGATGGAAATCTAGATAAAGTTAAATGAACGCTAAAGGTCTGGTGCGAGGCATCACACACCTTTAATCATGGGAAACGCAAAAAGAGCAACGCAAAACGACGAGGACTACACTTTCGTCAGTCCAgtagtcaaatatttactgttCTTCTTCAACATGATATTTTGGAAACAGCGCTGGCCTGTCTAACTGTGGATCCAGCTCTGATACTGATGGTAGTGGGAATTCTCATGTTCTTCATCACTTTCTGTGGCTGTGTGGGTTCTCTGAGGGAGAACATATGCTTACTGCAGACGTTCTGCATCTTCTTGACTATCATGTTTCTGCTGCAGCTTCTGGCTGGTGTTCTAGGATTTGTCTTCTCAGATAAGGCACGTGGCAAAGTAACGGATATGTTTGATAATGCCATCAAGCATTACAGAGACGATTTAGACCTACAGAACCTTATCGACTATGGACAAAAACAGTTTAACTGCTGCGGGGGGATTTCTTTCATGGATTGGTCAAAGAACATGTATTTCAATTGTTCAGACGACAATCCAAGCAGAGAGCGCTGTTCTGTACCCTTCTCCTGTTGTCTGCACGCCAAAGAGGAGACTATAATAAACACCATGTGTGGTCATGGCATGCAGGCGCTGAATTATCTGGCAGCCAGTGCCTTCATCAATACCAACGGCTGCATTGATATACTGGTCAACTGGATCCACAGTAACCTGTTTCTACTGGGAGGCATCGCACTAGGTCTCACCATACCCCAGCTGGTTGGAATCCTTCTCTCTCAGGTGCTTATTAATCAAATCCAAGATCAAATTAAACTACAGAATTACAACCAACAACATCGCTCAGACCCCTGGAGCTGAAAGAGAAAAGGAAAATCTGGGGGAAAAAAAGGATTTTGAGTGATGTTTTAAGATCATGTTTTTGATATTTTACAAATCTGAATATCTGTATGAATTGTAGCAAGACATGCTGATGATCAATAGGTCAATACATCTATTTTGGGATTGAAAACTGATTTTCAGTCTTGTGGTGTAAACTagtttatatgatatttattaaatTGCACTGCATATTTTAAAAGCAGACTTTGTATTTGGTCGATATGTCATCTGAGAacaaaaattattgtattattatttaccaATATAATGTgtgtaaaacattcattttaatagGTCAGGTATGCTtcctataaattttttttatttaacataattttgTAATTCAAGTATTATTGactattactttaaaaaaatgtattcaataagCACTTTTATAACATTACTAGTTGATCATATTAGTTTTGCTgatgatttttttcaaaatgggTTCCTACATCAACAACATTTCTGATTATAATCTGAATAAACACTGCAAGCTTGATCTGGCCAGAGAATCAAGTGTTTACTCTCCTCTTCATAATCTGGCAGTATAGTGAGTGTCTTCCTTCTGTTTGGAGAACAGAACGTTCATTCAGTGGATCccaatgttttgttgtttgttgtaaatataaataaaatattttgaagatatAAA

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0051604 protein maturation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-361 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN33 (tetraspanin 33).

Ensembl:

ensembl_id ENSDART00000111882

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057138 lncRNA upstream 25875 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00057673 lncRNA upstream 186832 14767982 ~ 14770585 (+) True XLOC_027214
TCONS_00053614 lncRNA upstream 223134 14727071 ~ 14734283 (+) False XLOC_027212
TCONS_00053607 lncRNA upstream 549119 14399472 ~ 14408298 (+) True XLOC_027208
TCONS_00057672 lncRNA upstream 768688 14185166 ~ 14188729 (+) True XLOC_027205
TCONS_00053627 lncRNA downstream 37625 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057674 lncRNA downstream 102833 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00057675 lncRNA downstream 136053 15104694 ~ 15114467 (+) True XLOC_027224
TCONS_00057676 lncRNA downstream 214864 15183505 ~ 15240713 (+) False XLOC_027225
TCONS_00057677 lncRNA downstream 238779 15207420 ~ 15240713 (+) False XLOC_027225
TCONS_00053620 mRNA upstream 25058 14926948 ~ 14932359 (+) False XLOC_027217
TCONS_00053618 mRNA upstream 47031 14899720 ~ 14910386 (+) False XLOC_027216
TCONS_00053619 mRNA upstream 50901 14900042 ~ 14906516 (+) True XLOC_027216
TCONS_00053617 mRNA upstream 93907 14826299 ~ 14863510 (+) True XLOC_027215
TCONS_00053615 mRNA upstream 220315 14727212 ~ 14737102 (+) True XLOC_027212
TCONS_00053624 mRNA downstream 2598 14971239 ~ 14979937 (+) True XLOC_027219
TCONS_00053625 mRNA downstream 13213 14981854 ~ 14990926 (+) True XLOC_027220
TCONS_00053626 mRNA downstream 37576 15006217 ~ 15010891 (+) False XLOC_027221
TCONS_00053628 mRNA downstream 42700 15011341 ~ 15059876 (+) True XLOC_027222
TCONS_00053634 mRNA downstream 637203 15605844 ~ 15659524 (+) False XLOC_027226
TCONS_00053616 other upstream 224294 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053612 other upstream 232203 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053603 other upstream 837858 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053602 other upstream 848607 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053579 other upstream 1372836 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053629 other downstream 105925 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053630 other downstream 106074 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053631 other downstream 107024 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053633 other downstream 250603 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053646 other downstream 1019746 15988387 ~ 15991090 (+) True XLOC_027234

Expression Profile

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