RNA id: TCONS_00053623


Basic Information

Item Value
RNA id TCONS_00053623
length 755
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_027218
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14957360 ~ 14968641 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCCGCAAGATGCGCTCCTGACATTTTGCTCAAACATCGAGAGACCTCGAGTTGATTCACCAGGATGGAAATCTAGATAAAGTTAAATGAACGCTAAAGGTCTGGTGCGAGGCATCACACACCTTTAATCATGGGAAACGCAAAAAGAGCAACGCAAAACGACGAGGACTACACTTTCGTCAGTCCAgtagtcaaatatttactgttCTTCTTCAACATGATATTTTGGAAACAGCGCTGGCCTGTCTAACTGTGGATCCAGCTCTGATACTGATGGTAGTGGGAATTCTCATGTTCTTCATCACTTTCTGTGGCTGTGTGGGTTCTCTGAGGGAGAACATATGCTTACTGCAGACGTTCTGCATCTTCTTGACTATCATGTTTCTGCTGCAGCTTCTGGCTGGTGTTCTAGGATTTGTCTTCTCAGATAAGGCACGTGGCAAAGTAACGGATATGTTTGATAATGCCATCAAGCATTACAGAGACGATTTAGACCTACAGAACCTTATCGACTATGGACAAAAACAGTTTAACTGCTGCGGGGGGATTTCTTTCATGGATTGGTCAAAGAACATGTATTTCAATTGTTCAGACGACAATCCAAGCAGAGAGCGCTGTTCTGTACCCTTCTCCTGTTGTCTGCACGCCAAAGAGGAGACTATAATAAACACCATGTGTGGTCATGGCATGCAGGCGCTGAATTATCTGGCAGCCAGTGCCTTCATCAATACCAACGGCTGCATTGATATACTG

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0051604 protein maturation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-361 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN33 (tetraspanin 33).

Ensembl:

ensembl_id ENSDART00000148292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057138 lncRNA upstream 25926 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00057673 lncRNA upstream 186883 14767982 ~ 14770585 (+) True XLOC_027214
TCONS_00053614 lncRNA upstream 223185 14727071 ~ 14734283 (+) False XLOC_027212
TCONS_00053607 lncRNA upstream 549170 14399472 ~ 14408298 (+) True XLOC_027208
TCONS_00057672 lncRNA upstream 768739 14185166 ~ 14188729 (+) True XLOC_027205
TCONS_00053627 lncRNA downstream 38633 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057674 lncRNA downstream 103841 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00057675 lncRNA downstream 137061 15104694 ~ 15114467 (+) True XLOC_027224
TCONS_00057676 lncRNA downstream 215872 15183505 ~ 15240713 (+) False XLOC_027225
TCONS_00057677 lncRNA downstream 239787 15207420 ~ 15240713 (+) False XLOC_027225
TCONS_00053620 mRNA upstream 25109 14926948 ~ 14932359 (+) False XLOC_027217
TCONS_00053618 mRNA upstream 47082 14899720 ~ 14910386 (+) False XLOC_027216
TCONS_00053619 mRNA upstream 50952 14900042 ~ 14906516 (+) True XLOC_027216
TCONS_00053617 mRNA upstream 93958 14826299 ~ 14863510 (+) True XLOC_027215
TCONS_00053615 mRNA upstream 220366 14727212 ~ 14737102 (+) True XLOC_027212
TCONS_00053624 mRNA downstream 3606 14971239 ~ 14979937 (+) True XLOC_027219
TCONS_00053625 mRNA downstream 14221 14981854 ~ 14990926 (+) True XLOC_027220
TCONS_00053626 mRNA downstream 38584 15006217 ~ 15010891 (+) False XLOC_027221
TCONS_00053628 mRNA downstream 43708 15011341 ~ 15059876 (+) True XLOC_027222
TCONS_00053634 mRNA downstream 638211 15605844 ~ 15659524 (+) False XLOC_027226
TCONS_00053616 other upstream 224345 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053612 other upstream 232254 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053603 other upstream 837909 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053602 other upstream 848658 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053579 other upstream 1372887 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053629 other downstream 106933 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053630 other downstream 107082 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053631 other downstream 108032 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053633 other downstream 251611 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053646 other downstream 1020754 15988387 ~ 15991090 (+) True XLOC_027234

Expression Profile

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