RNA id: TU2208725


Basic Information

Item Value
RNA id TU2208725
length 3305
RNA type TUCP
GC content 0.43
exon number 3
gene id G1930981
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38976417 ~ 38982781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTTCATACCGTTTATTAGGCAGTTATAataatacacatggttagcagttgGTGAAGCTAGCTGTGTACAGTAGTCAGTAAAAATAGATCAACAAACCAAACTGTTTTAGGGAACAACACTGTTCTCATAGCATGTGACATTCATTTCAAACAAAGGCAGGTCTTTGTCCAGTACATACAAAAATCaacagcaaaaaaatatatataatgaatCAAAAAATACATGTATTCTTTTTTTGCcatgagagaaagaaaaaagtaTGCGAGGAAAAATGGCAAGTTACTGTAAAACTGTGGTACGTTACTGTAAAACTATGGCACGTTACTGTAAAACGATGGCACGTTACTATTAAACAATGGCATGTTACTGTAAAACGATGGCATGTTACTGTAAAACAATGGCACGTTACTGTAAAACAATGGCACGTTACTGTAAAACAATGGCACGTTACAGTAAAACTATGGCACTTTACTGTAAAACGATGGCACGTTACTGTAAAACTATGGCACGTTACTGTAAAACGATGGCACGTTACTGTAAAACGATGACACGTTACTGTAAAACTATACTATAGAAATGCTGTATTGTCCCTGGTTAGACCAGtcccctacagacagacagagagatgactAAACAAGCTTCACACTGTTGCTAATAGCACCAGCTGTCTATCAAATACATGTGTAGATTAGTGTACTCATATTAGTGTGTATATGAGTAGTCTGTTTATATTTGTTTAAACACTCCCTGCTAAATAGCTCCATGTAAAAGCAAGTCAAATATAGTACGGAGTAAGTCAGATACATGTATACCGGTAATCGTATCAGTGTGTAATTAACAGTAGACTTGTCAGTCAGTGATGCCACTGTGGACCCAGTCATCCAAAGAATGTTGAGTTAAACAGTAGATGTGAAATAGTGAGGATTTATAATAATGTAATGTCGTTTCTGACATAACAACATCTGTGTGAGAATATAACATATACACATGCAAGACTTCTAGAAAGAGAATGTGTGGTTAAGGAGTTCTGCTAGTTTGGAGAAAGTAGTGTtcagagtagagtggagtagagtagaatttagtagagtggagtagagtgtagtagagtagaATGTAgtggagtgtagtagagtagaatgtagtggagtgtagtagagtggagtagagtagagtagaatgtagtggagtgtagtagagtagaatgtagtggagtagaatgtagtagagtGGAGTGTAGTAGAGTATAATTTAGTAGAGTGGAGTGTAGtagagtagaatgtagtagagtaTAATttagtagagtggagtagagtagagtagaatgtagtagaatggagtagagtagagtagaatgtagtagagtggagtgtagtagagtagaatatagtggaATTTAGTAGAGTGGAGTATAGTATAATTTAGTAGAGTGGAGTATAGTAGAATTTAGtagagtgtagtatagtataatgtagcagAGTAGAATGTGGCAGAGTAGAATggagtagagtgtagtagagtagagtagaatgtagtagagtaGAATGGAGTGTAGtagagtagaatgtagtagagtaGGATGTGGCAGAGTAGAATggagtagagtgtagtagagtagaatgtagtagagtagaatgtagtagagtagagtgtagtagagtatagtgtaatagtgtagtagagtagagtgtagtagtgtggtagagtGTAGTGTAGTAGAGTGGGGtaaagtgtagtgtagtgtagtagagtgtagtaggatagtagagtgtagtagagtggagtagtggagtagagtggagtggagtagtgtagtagagtagagtgtagtagagtggggtatagtgtagtgtagtgtagtagagtgtagtaggatagtagagtgtagtagagtggagtagtggagtagagtggagtgtagtagagtagagtgtaggagagtgcagtggagtggagtagagtggagtgaaggagaggagtgtagtagagtagagtgtagtggAGTAGAGTGTAGGAGAGTGtagtggagtagagtggagtgAAGGAGAGtggagtatagtagagtagagtgtaggacagtgtagtggagtagagtagagtggagtgaaggagagtagagtagatcGGCATAGTACAGTAGCATACAATATAGTATAATAGATTAGAGAagtagagtataatctagtataatagagtagagaagtagagtataatatagtagagcagtagagtataatatagtataatagagtagagcagtagagtataatatagtataatagagtagagcAGTGTGGGCCACTAGCCTTTATTTGACCTCAGCTCAGCTAAACACATGATCCAGTAAGACTAAATTGGGGTGCATTTCAATAGCATAAAgtatctccccttcctcctttcctttcctttcatcTGCACTACGGAAAAGGAACCAGACTGGAGACACACAGGACTCCAGACCACAAATGACAACGGGAGGGAGGTTCGAGTCTCATCTCCGCGCCTCTGTCAAGCCTTttcttcctgtctccctctcgaAGACCAGAGATGAAAAGACCAGAGGAAGCTACCTTAGACTATCGAGATGCACCCAGGGGCTTAACTTAGACTATCGAGATACACCCAGGGGCTGACAGACATAAAGACAAGGAGACAAGAGGACAACGTGGGGGGGGCAGTAGCGTGTGTGTCAGCCGTCAGAGGGCTATACTGTCAGCTCCACAGGGTGGGTTGATGTAATAGTCTCTATATATCCGATCCTTTCATTCTGCGCTTGGAAGGGGGCACCAGACGGGCGGGCAGTTCAGGGGGCAGACCATGCCCCTCTAACTTCACCTCGATCAGGTGGCTGGCCAGGGCAAACTCCTCGTCATCCAGCATGCCATCCCGGTCCACATCCGACAGCTTCCAGATCCTCCCCAGGACGGAGTTTGGCAGCCGGGTGCTCACCATCCAGTCCTTGGCCTTGGTGCCACTCAGCTTGCCCTCGTTGGGCGCCAGGTTGTAGAAGATCTCGTCGTATTTGGGCTTGTCCTTGGTCACGACCCAGGCCATCTCGCCCTCTTCCTCGCCTTCCTCCCCCCCATTCTCCACCTCTCCGAATGGGTCGTTCTCCACGAAGGGCCCGGCGCGGGTTCCCAGGAAGGCCCCCCCCTGCACCCCTGGTTGCACCCCCGCGTCAATCTCCTCCTGGCGTAGCAGGGGCATGAGCTTGGCGATGTCGGACGCCAGCAGCTCGTCCAGAGCGGCCATCAGGGACGGCTTCAGGGGCTTGAACTTAGTGAAGTCATGGATCAACAGTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2208760 lncRNA downstream 32169 38943478 ~ 38944248 (-) False G1931007
TU2208788 lncRNA upstream 3703 38983683 ~ 38986184 (-) True G1931025
TU2208803 lncRNA upstream 23875 39003855 ~ 39061833 (-) True G1931037
TU2208828 lncRNA upstream 71567 39051547 ~ 39053146 (-) True G1931058
TU2208697 lncRNA upstream 78847 39058827 ~ 39068232 (-) False dhx34
TU2208677 lncRNA upstream 78940 39058920 ~ 39068232 (-) False dhx34
XM_036961388.1 mRNA downstream 141231 38815963 ~ 38835186 (-) True napab
XR_005039329.1 mRNA downstream 149583 38824475 ~ 38826834 (-) True LOC118944021
XM_021581656.2 mRNA downstream 167778 38797271 ~ 38808639 (-) True b3gnt2l
XR_005039393.1 mRNA downstream 183271 38790432 ~ 38793146 (-) False LOC118944085
XM_036961565.1 mRNA upstream 9692 38989672 ~ 38998951 (-) True LOC110503438
XM_036961566.1 mRNA upstream 19003 38998983 ~ 39000772 (-) True LOC118944041
XM_036962184.1 mRNA upstream 78710 39058690 ~ 39087005 (-) False dhx34
XM_036962183.1 mRNA upstream 82523 39062503 ~ 39087003 (-) False dhx34
XM_036962186.1 mRNA upstream 116847 39096827 ~ 39113426 (-) True st14a
TU2208592 other downstream 190146 38785578 ~ 38786271 (-) True G1930910
TU2208538 other downstream 238818 38736517 ~ 38737599 (-) False G1930873
TU2208705 other upstream 94336 39074316 ~ 39075133 (-) False dhx34
TU2208702 other upstream 105595 39085575 ~ 39087003 (-) True dhx34
TU2208958 other upstream 351854 39331834 ~ 39350639 (-) True G1931133
TU2209757 other upstream 1485640 40465620 ~ 40465867 (-) True G1931785
TU2210500 other upstream 2176391 41156371 ~ 41156733 (-) True G1932422

Expression Profile