RNA id: TCONS_00053625


Basic Information

Item Value
RNA id TCONS_00053625
length 2610
RNA type mRNA
GC content 0.46
exon number 20
gene id XLOC_027220
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14981854 ~ 14990926 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGATGGTGGAGGCGCGCGCCTGAAGCAGGAGGATCAGTATGGCTCAAATCAAACCCACGATGTCCGTTGATGTGGAGAGTCGGAGGCGACGGTCCACCGAGAGCTCAGAGCCCTTCTTGGACCATGACCCTAAAGGTCGCCGCTGTAGCTCCCAATGTGACAGACTGTGTGTAGCCGGAGCATATCATGAGATCCCAGATACTCCTTCACCCTGCACATCCCAGTATTTCGGACATTACACTCCGAAATGCCTCTCTGCCCACAGGCATTCCATGCATGCACGATGCCCAGAAGACATTTGGCAGGAGGCGAGCATCAGAACCTCTATCCGAGCAGAAAATGAGGTGGAGGCACACAAAGTTGCCAACAACTACAAGTTTGGTTTCAGGAAATGGAAGAGTCATGTAACTGAGCGACCAATCGAGGACCGGTCTGATGTAGTTAAGGAGCTTTATTCTGAGCTCAACTATGTCAAACAACTTTCAGGATCTCTGGTCACTGCTGGAAATATAGTATATGTGTTGCTATTTGGGTGGTGGATctccttgttttattttttggttggTTTGCTGATGTTTTTCACCATCGCTGGCATCCCATATGgaAAGCTTTGTTTGCAGCTGTCAGGGTATTTCATATGGCCATTTGGAAAAGCATTGCAGAAAAGCAGCAGTCTGGTTAAGAGATGTTGTGTGAAATTCCCCCACTGTGAGGCTATTCCAGAGGAGGTGGACGAGGTGAAGGAGCCTTTAAAAGAGTCCACACCTCTGCTGCACTCCGGTCCTGCTGTCACTGCTGAAATCCCTGTGCCTGCACCACCCACCAAGCCCACACGTTACTGGTGTCGATTAAGTACATATGTTTGGCTGATACTGGGTTACCCTCTGCTGGCTGTGGTTCATTGCCTGGCCATGTTCCTGTCCTGGATGATGGTGTTCACCATCCCTGTGTCAAAGATGAACGCCAGGACCTTGAGCCTCATCCTGCTCATGCCACCAGAACAGGTCAAAGTTCGCAATGTGAAAAAGCCACAAGGCTGTGAGACCAGAGTCCTGCTTTGCTGTTACCGAGCCTTCAACTGGTACTATTACAAATACACTGTGGATGGGATCAATGTGTTTGCTGTTAACCTGTTGCCGCTGGTTATCATCACTCTAATAATCGGCTATATGGACAGAGAGAATTACTTTGTGAGCTCAGAAGTAAAGTTTGCCACAGCATTGATCTCCATTATCCCATTGTCCTACTACATCGGGATGGGAATAGCAAGTATTTCCGCACAGAGTAACTTTGCTGTGGGAGCGGTAGTAAACGCCACGTTCGGCTCCATTACAGAGATGGCCTTCTACATCACAGCTTTACTCCAGGGTCAGCGTGCGGGATCCCAGTGTTATGCAGAACTTGTCAAATCTGCTCTCACAGGCACCCTGCTGGGCTGTATCCTCTTCATACCGggGCTCTGTATGATCATTGGCGGCTTTAAACACAGCGAGCAGCGGTTCAACAGCAGGTCAGCAGGTGTCAGTTCAGCACTGCTCTTCATATCAGTAGGAGGTGTTTTCGCCCCCACGCTCTTTTCGAAGGCTTATGGAAATTTTATATGCGAGGGCTGCAACAACCCTCCTGGTAACATCTCAAAGCCCTTCATATGCAACAACTGCCACTACGACCTGAGTGAAAACAACCGACCTCTGTTTTTGAGTCACATCGAGCCTTTAGTGTACACCGTCTCTGTCCTGTTGCCTGCTGCGTATCTGGTTGGTCTGATCTTCACCCTCAAGACTCATTCGCACATTTATGACATCCACATCAGCGATGGCCACTGTCACGTTATTAGTGATCATCACGCAGTGGCTCACTGGTCGAGGACGAGAGCTTTAGTGGTGCTCATTTTGGCTACTATATTGATGGCTGCTTGTGCTGATCTGAGCACCGAACATATCAAGCCTATCATATCCAACTCCAGCGTCTCACAGTATTTTATTGGCGTTACTATAATAGCCATGGTTCCTGAGCTTCCTGAGATAGTCAATGGCGTCCAGTTTGcgcttcaaaacaacatcagtcTCAGTCTGGAGGTGGGGAGTTGTTTAGCAGTTCAGGTGTGCATGCTGCAGATCCCTCTACTCATCTTGTTCAATGCTTTTTACGATGTTGGATTCGTTCTCATATTCAGCGATTTGCACCTCTGGGCAAGCATCTTCAGCGTTATCCTGGTAAACTACATATTTATGGATGGAAAGTCAGACTATTTCCAAGGAACGGCTCTGGTGGTTGTTTACCTCATTCTCCTGGCTTTATATTTTTTCGCACCTGCTCCTCTTGGATGttgaacttcttttttttttttctccaataatattttattgttgaaATGTTTGTCTTTTGTATAAGAATGTTTTCCCAAAGAATAGAAATCAATTCTTTCCTAGTGTGTGTCTAAAGCTGAAAACAGTTTCACAGTGTTTACTTGAATAAAATATGCACTAAAAATGAATTCAcgaaaaaatctatatatttagcTACCCAtcatgatttaaaaaatgaataaataaattttgtattCCTATGATGCTACCTGTGTGATTTAATCCAAGTTAGAACGCA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0014032 neural crest cell development biological_process
GO:0006816 calcium ion transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015369 calcium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3044 Predicted to enable calcium:proton antiporter activity. Acts upstream of or within calcium ion transport and neural crest cell development. Located in endomembrane system. Is expressed in neural crest cell.

Ensembl:

ensembl_id ENSDART00000067046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057138 lncRNA upstream 50312 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00057673 lncRNA upstream 211269 14767982 ~ 14770585 (+) True XLOC_027214
TCONS_00053614 lncRNA upstream 247571 14727071 ~ 14734283 (+) False XLOC_027212
TCONS_00053607 lncRNA upstream 573556 14399472 ~ 14408298 (+) True XLOC_027208
TCONS_00057672 lncRNA upstream 793125 14185166 ~ 14188729 (+) True XLOC_027205
TCONS_00053627 lncRNA downstream 15340 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057674 lncRNA downstream 80548 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00057675 lncRNA downstream 113768 15104694 ~ 15114467 (+) True XLOC_027224
TCONS_00057676 lncRNA downstream 192579 15183505 ~ 15240713 (+) False XLOC_027225
TCONS_00057677 lncRNA downstream 216494 15207420 ~ 15240713 (+) False XLOC_027225
TCONS_00053624 mRNA upstream 1917 14971239 ~ 14979937 (+) True XLOC_027219
TCONS_00053622 mRNA upstream 13213 14957417 ~ 14968641 (+) False XLOC_027218
TCONS_00053621 mRNA upstream 13781 14957360 ~ 14968073 (+) False XLOC_027218
TCONS_00053623 mRNA upstream 14221 14957468 ~ 14967633 (+) True XLOC_027218
TCONS_00053620 mRNA upstream 49495 14926948 ~ 14932359 (+) False XLOC_027217
TCONS_00053626 mRNA downstream 15291 15006217 ~ 15010891 (+) False XLOC_027221
TCONS_00053628 mRNA downstream 20415 15011341 ~ 15059876 (+) True XLOC_027222
TCONS_00053634 mRNA downstream 614918 15605844 ~ 15659524 (+) False XLOC_027226
TCONS_00053635 mRNA downstream 614918 15605844 ~ 15816540 (+) True XLOC_027226
TCONS_00053636 mRNA downstream 828802 15819728 ~ 15840799 (+) True XLOC_027227
TCONS_00053616 other upstream 248731 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053612 other upstream 256640 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053603 other upstream 862295 14116366 ~ 14119559 (+) False XLOC_027201
TCONS_00053602 other upstream 873044 14106511 ~ 14108810 (+) False XLOC_027200
TCONS_00053579 other upstream 1397273 13584483 ~ 13584581 (+) True XLOC_027191
TCONS_00053629 other downstream 83640 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053630 other downstream 83789 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053631 other downstream 84739 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053633 other downstream 228318 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053646 other downstream 997461 15988387 ~ 15991090 (+) True XLOC_027234

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000020_03350468_03358669.mRNA True 1799 mRNA 0.47 15 CI01000020 3350453 ~ 3358669 (-)
bowfin (Amia calva) AMCG00006533 True 2678 mRNA 0.50 21 CM030134.1 7967991 ~ 7981094 (+)