RNA id: TU2206572


Basic Information

Item Value
RNA id TU2206572
length 538
lncRNA type intronic
GC content 0.40
exon number 4
gene id G1929429
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39036016 ~ 39038600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatacaggttagtaatgagactatatacagggggtacaggttagtaatgagactatatacagggggtacaggttagtaatgagactatatacagggggtacaggttagtaatgagactatatacaggggtacaggttagtaatgagactatatacaggggtacaggttagtaatgagactatatacagggggtacaggttagtaatgagactatatacagggggtacaggttagtaatgagaccatatacaggggtacaggttagtaatgagactatatacaggggtacaggttagtaatgagactatatacgggggggtacaggttagtaatgagactatatacagggggtacaggttagtaatgagactatatacaggggatacaggttagtaatgagactatacagtgccttgcaaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206520 lncRNA upstream 52471 38981986 ~ 38983545 (+) True G1929381
TU2206515 lncRNA upstream 97674 38938060 ~ 38938342 (+) True G1929378
TU2206309 lncRNA upstream 104367 38929572 ~ 38931649 (+) False bicra
TU2206507 lncRNA upstream 115543 38906678 ~ 38920473 (+) True G1929370
TU2206490 lncRNA upstream 152635 38881375 ~ 38883381 (+) False G1929357
TU2206577 lncRNA downstream 8403 39045419 ~ 39046818 (+) True G1929432
TU2206585 lncRNA downstream 14120 39051136 ~ 39051966 (+) True G1929438
TU2206596 lncRNA downstream 25337 39062353 ~ 39063481 (+) True G1929443
TU2206601 lncRNA downstream 32494 39069510 ~ 39070911 (+) True G1929447
TU2206607 lncRNA downstream 45682 39082698 ~ 39083274 (+) True G1929453
NM_001165187.1 mRNA upstream 45747 38983650 ~ 38990269 (+) True psmd8
XM_036961043.1 mRNA upstream 48712 38983607 ~ 38987304 (+) False psmd8
XM_036961454.1 mRNA upstream 58272 38943424 ~ 38977744 (+) False ehd2b
XM_036961455.1 mRNA upstream 58272 38960529 ~ 38977744 (+) True ehd2b
XM_036962177.1 mRNA upstream 103441 38845482 ~ 38932575 (+) False bicra
XM_036961567.1 mRNA downstream 50095 39087111 ~ 39091233 (+) True LOC118944042
XM_036962185.1 mRNA downstream 54503 39091519 ~ 39096712 (+) True LOC110503486
XM_021581558.2 mRNA downstream 170161 39207177 ~ 39235039 (+) False LOC110503192
XM_036961823.1 mRNA downstream 171596 39208612 ~ 39235039 (+) True LOC110503192
XM_036961242.1 mRNA downstream 201164 39238180 ~ 39350381 (+) False LOC110516717
TU2206305 other upstream 103467 38931839 ~ 38932549 (+) True bicra
TU2206306 other upstream 400624 38590181 ~ 38635392 (+) True ppp1r13l
TU2206278 other upstream 522911 38509846 ~ 38513105 (+) True G1929196
TU2206073 other upstream 837492 38197898 ~ 38198524 (+) True G1929037
TU2206015 other upstream 928790 38092415 ~ 38107226 (+) True LOC110511668
TU2206900 other downstream 510796 39547812 ~ 39549780 (+) True G1929664
TU2207080 other downstream 837262 39874278 ~ 39877275 (+) True G1929808
TU2207096 other downstream 851311 39888327 ~ 39889155 (+) True G1929816
TU2207191 other downstream 988919 40025935 ~ 40028517 (+) False G1929891
TU2207202 other downstream 988919 40025935 ~ 40028517 (+) False G1929891

Expression Profile