RNA id: TU2206661


Basic Information

Item Value
RNA id TU2206661
length 258
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G1929493
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39202681 ~ 39202938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACACGTGTTGTGTCGCAGCAGTCAGCAGAGTCACTAGGCCAAATACAAGCACGAATAGCCTATAGTGGCTGGCGCTAGCCAAAAGTGAGTGAACTGCTGGGGAAATCTTCAGGAGATGCGGTATTTAATTTTCCATAGGGAGACGAGAATATTGAATAGAATTGAGACCTTCCTTCTCACTGGTttacactccagtccagttggtggcggtgatgcaccttaaagttggttgtcAACCACTATATAAAATcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206636 lncRNA upstream 54806 39147625 ~ 39147875 (+) True G1929468
TU2206635 lncRNA upstream 59422 39142629 ~ 39143259 (+) True G1929467
TU2206630 lncRNA upstream 94718 39106767 ~ 39107963 (+) True G1929462
TU2206622 lncRNA upstream 104450 39096885 ~ 39098231 (+) True G1929456
TU2206607 lncRNA upstream 119407 39082698 ~ 39083274 (+) True G1929453
TU2206663 lncRNA downstream 927 39203865 ~ 39204130 (+) True G1929495
TU2206714 lncRNA downstream 84760 39287698 ~ 39291335 (+) True G1929526
TU2206718 lncRNA downstream 108574 39311512 ~ 39311974 (+) True G1929530
TU2206751 lncRNA downstream 175111 39378049 ~ 39399639 (+) True G1929560
TU2206753 lncRNA downstream 182020 39384958 ~ 39388137 (+) True G1929562
XM_036962185.1 mRNA upstream 105969 39091519 ~ 39096712 (+) True LOC110503486
XM_036961567.1 mRNA upstream 111448 39087111 ~ 39091233 (+) True LOC118944042
XM_036962033.1 mRNA upstream 153005 39020800 ~ 39049676 (+) False spred3
NM_001165187.1 mRNA upstream 212412 38983650 ~ 38990269 (+) True psmd8
XM_036961043.1 mRNA upstream 215377 38983607 ~ 38987304 (+) False psmd8
XM_021581558.2 mRNA downstream 4239 39207177 ~ 39235039 (+) False LOC110503192
XM_036961823.1 mRNA downstream 5674 39208612 ~ 39235039 (+) True LOC110503192
XM_036961242.1 mRNA downstream 35242 39238180 ~ 39350381 (+) False LOC110516717
XM_036961243.1 mRNA downstream 35242 39238180 ~ 39350381 (+) False LOC110516717
XM_036961244.1 mRNA downstream 52849 39255787 ~ 39350381 (+) True LOC110516717
TU2206559 other upstream 153988 39020833 ~ 39048693 (+) True spred3
TU2206305 other upstream 270132 38931839 ~ 38932549 (+) True bicra
TU2206306 other upstream 567289 38590181 ~ 38635392 (+) True ppp1r13l
TU2206278 other upstream 689576 38509846 ~ 38513105 (+) True G1929196
TU2206073 other upstream 1004157 38197898 ~ 38198524 (+) True G1929037
TU2206900 other downstream 344874 39547812 ~ 39549780 (+) True G1929664
TU2207080 other downstream 671340 39874278 ~ 39877275 (+) True G1929808
TU2207096 other downstream 685389 39888327 ~ 39889155 (+) True G1929816
TU2207191 other downstream 822997 40025935 ~ 40028517 (+) False G1929891
TU2207202 other downstream 822997 40025935 ~ 40028517 (+) False G1929891

Expression Profile