RNA id: TCONS_00057676


Basic Information

Item Value
RNA id TCONS_00057676
length 1245
lncRNA type antisense_over
GC content 0.42
exon number 8
gene id XLOC_027225
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15183505 ~ 15240713 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATAGTTGCCAGGTTCACACAAACAACGCATGTAGCAGAGGAATAAAAACGTGAAGATTTTAGCATGTTGTTCTATCAGCAGAAATTGTGTGTGAGGCTCCTCCAGAAAATTCATATTCACTGATAGTAAAGAATAAGGCATGCGTTTGGATCATACAGTCAACAGATGCAGAGCTCTGGGACGTTTGGAGTGATCTTCACTGCAGTGATGGGCATCAGCTGTGGACAGAATAAGGCATGTGTTTGGACCATACAGTCAACAGGCGTAAAGAATAAGGCATTTGTTTGGACCTTACAGTCATCAGGCGCAAAGCTTTGGGACTTTTGGACTACATTTACTGGTGTGATAGACATCTGCTGTGGACAGAGAATAAgggatgtgtttggactgtacaGCCAACAGAAACAGAGCTCCAGGACGTTTGGACAGCCGTTTGGACATCTGCTGATGCTCAGtcAGGGAGAAGGATGGAGGATGCAGTGAAGTGGAACTCATAGGCAGCCACCCCTTCTCTACACAGCAGAGCTGGATGGCCACCCACTCTactgcatcatggcttgctCGTCCACATTGAGTCTTACCAGAGTCTTGTAATCAATTTGCTGTCTGATGAGCTTGTCTTCACTGAGTGAGTAGCGGGCTTCGCCGGTGATGGAGTCGATGGGACCTTTTTCCATCTGTTGCTTTATGGCACAGAAAAGAGAGAAGAGGGGCTCCCCGGCACACTCCTacacaaagaaaaaaaggcaCTCTGTCATTTTCACTCTTAAATTTCACACCAGCCACCTACAGAGAATGTGGGATGTCATTTCCACATTCAGTAAcagcaataaatattttgaatgGAGCTTAACAGTTGTGGCACTACCGTGACAATATCAACTTATGCTACAATTTCACTCCATGAGAGATCCCATGATTGTCTTCATTCTTTTTCAGGCAAATGTCCCCTTGGTGGATAGAAAGAGACTGAGCAACAATTCACAGTTACACATTATATGCTTTACCAATTAgtctagcttaaataaaattttgaGTACAtcattaatgtgtttatttactcAGCCATGATTACTGTTACATTGAaaagccaataaaataaccatTACTGATATCAAATGGCTATTACATCTTAATTTACTAAAAATTTAGTTtctatttttaatttctgtaacacacacatgctcactgaCATCAAAGTCAAACGATAAACGAAAGGTACTGAAGTGTAGTGTCTGTAGC

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048854 brain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007418 ventral midline development biological_process
GO:0021508 floor plate formation biological_process
GO:0009790 embryo development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0043022 ribosome binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057675 lncRNA upstream 69038 15104694 ~ 15114467 (+) True XLOC_027224
TCONS_00057674 lncRNA upstream 107453 15071474 ~ 15076052 (+) False XLOC_027223
TCONS_00053627 lncRNA upstream 175324 15006266 ~ 15008181 (+) True XLOC_027221
TCONS_00057138 lncRNA upstream 251963 14931339 ~ 14931542 (+) True XLOC_027217
TCONS_00057673 lncRNA upstream 412920 14767982 ~ 14770585 (+) True XLOC_027214
TCONS_00057139 lncRNA downstream 628499 15869212 ~ 15881144 (+) True XLOC_027228
TCONS_00053647 lncRNA downstream 760525 16001238 ~ 16004425 (+) True XLOC_027235
TCONS_00057684 lncRNA downstream 767510 16008223 ~ 16013451 (+) False XLOC_027236
TCONS_00057685 lncRNA downstream 767603 16008316 ~ 16023375 (+) False XLOC_027236
TCONS_00057686 lncRNA downstream 778313 16019026 ~ 16023375 (+) False XLOC_027236
TCONS_00053628 mRNA upstream 123629 15011341 ~ 15059876 (+) True XLOC_027222
TCONS_00053626 mRNA upstream 172614 15006217 ~ 15010891 (+) False XLOC_027221
TCONS_00053625 mRNA upstream 192579 14981854 ~ 14990926 (+) True XLOC_027220
TCONS_00053624 mRNA upstream 203568 14971239 ~ 14979937 (+) True XLOC_027219
TCONS_00053623 mRNA upstream 215872 14957468 ~ 14967633 (+) True XLOC_027218
TCONS_00053634 mRNA downstream 365131 15605844 ~ 15659524 (+) False XLOC_027226
TCONS_00053635 mRNA downstream 365131 15605844 ~ 15816540 (+) True XLOC_027226
TCONS_00053636 mRNA downstream 579015 15819728 ~ 15840799 (+) True XLOC_027227
TCONS_00053637 mRNA downstream 648724 15889437 ~ 15940249 (+) False XLOC_027229
TCONS_00053638 mRNA downstream 648726 15889439 ~ 15966260 (+) False XLOC_027229
TCONS_00053631 other upstream 107773 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053630 other upstream 108681 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053629 other upstream 108842 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053616 other upstream 450382 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053612 other upstream 458291 14725074 ~ 14725214 (+) True XLOC_027211
TCONS_00053646 other downstream 747674 15988387 ~ 15991090 (+) True XLOC_027234
TCONS_00053651 other downstream 810887 16051600 ~ 16055777 (+) False XLOC_027237
TCONS_00053652 other downstream 819843 16060556 ~ 16064736 (+) False XLOC_027237
TCONS_00053668 other downstream 1657928 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 1821267 17061980 ~ 17062097 (+) True XLOC_027258

Expression Profile

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