RNA id: TCONS_00053634


Basic Information

Item Value
RNA id TCONS_00053634
length 1464
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_027226
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15605844 ~ 15816540 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGCTGACACAGGCAGATACAGGAGCGCAGTTTCCAAAAGCAAAGACCCCTCCGGTTTACTTATATCTGTAATAAGgACACTGTCCAGTAGTGATGATGTGCAGGACCGAGAGACGGAGAAGGGCCGTCTGGAGGAGGCGTATGAAAAGTGTGATCGGGATCTGGACGAGTTGATCGTTCAGCACTACACAGAGCTCACCACAGCCATCCGAACCTACCAGAGCATCACTGAGAGAATAACTAGCTCTCGCAACAagatcaaacagGTCAAGGAGAACCTGCTGTCCTGTAAGATGCTCCTCCACTGTAAGCGGGATGAACTGAGGAAGCTGTGGATTGAGGGTGTCGAGCACAAGCATGTCCTTAGCCTGTTGGATGAGATCGAAAACATCAAACAGGTGCCTCAGAAATTGGAGGCGTCCATGGCCAGCAAGCATTACCTGCATGCGACGGATATGCTGGTCTCTGCTGTGGATTCTCTTGAAGGACCTCTCCTGCAGGTGGAGGGCCTTGGCGACTTGCGACTGGAGCTCCACAGCAAGAAGCTCAATATCCACCTGGTGCTAATAGATGAGCTTCACCGACACCTCTATATCAAATCTACCAGCCGCGTAGTTCAACGGGGCAAAGACAAGGACAAGAACCGGCCTGCACCGAAAGACTCGTCAGTTTTGGATGTCAGTGGTTTGTCCACTCCACGCAAGATCACAGAACCTTCACAATTCAGCACACCTGGAACATCCAGCTTGCGTGAGGTGCAGGAAATGAGAGAGGACCTGGACGTGGACCCAGAGGAGAACAGTGCAGAGTTCATGGGGATTCTGATTAAAGCTCTGGCCAAACTCAAGAAGATCCCTGAGACCATTAAAGCCATCATGGAGAGGCTGGAGCCAGAGCTCAAGCAGATCCTCAAGAGATCCACCACTCAGATTGCTGACCATGCCTACCAGAGGGGAGAGAGCCTGGCACAGGACAACCAGCCCAGGTTGCTGCTGGAACTGCTGGAGTTGTTGTTTGATAAGTTGAATGCGGTGGCCCAGGCTCACAGTGTGGTTCTCAGTCACCTTCAGCAGATTGTTGTCTCTCCCAATGGAGCCCAGGAAGGGATCAAACTCTATGAGCAGGCTGATGTCTATGCCAAAATTCAAACTGTCCTACAGGTCCTGCTAATGGACTACCTGGATGTCAAAAACACCCGTAGCGCAGCAGAACCTTCTGCCCAGCTGTCCTACGCCAGCACCGGTGGAGATTTTGGAGCGTTTTTCGCCAAGAAGAAACCTCTCAGACCCAAACAGTCTCTTTTCAAGTTTGAGTCTTCATCCCACGCCATTAGCATGAGCGCATACCTGCGGGAGCAGCGGAGGGAGCTCTACAGCAAAAGTGGAGAGCTACAAGtccctttattaatttggggtcgccacagcggaatgaaccgccaactaatccagcacatgttctag

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0090522 vesicle tethering involved in exocytosis biological_process
GO:0006893 Golgi to plasma membrane transport biological_process
GO:0006612 protein targeting to membrane biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0032584 growth cone membrane cellular_component
GO:0000145 exocyst cellular_component
GO:0045202 synapse cellular_component

KEGG:

id description
ko05132 Salmonella infection
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041210-112 Predicted to be involved in Golgi to plasma membrane transport; chemical synaptic transmission; and exocytosis. Predicted to act upstream of or within protein transport; vesicle docking involved in exocytosis; and vesicle tethering involved in exocytosis. Predicted to be part of exocyst. Predicted to be active in growth cone membrane and synapse. Orthologous to human EXOC4 (exocyst complex component 4).

Ensembl:

ensembl_id ENSDART00000101619

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057676 lncRNA upstream 365131 15183505 ~ 15240713 (+) False XLOC_027225
TCONS_00057677 lncRNA upstream 365131 15207420 ~ 15240713 (+) False XLOC_027225
TCONS_00057678 lncRNA upstream 365131 15207431 ~ 15240713 (+) False XLOC_027225
TCONS_00057679 lncRNA upstream 365131 15207436 ~ 15240713 (+) False XLOC_027225
TCONS_00057682 lncRNA upstream 365131 15217910 ~ 15240713 (+) False XLOC_027225
TCONS_00057139 lncRNA downstream 209688 15869212 ~ 15881144 (+) True XLOC_027228
TCONS_00053647 lncRNA downstream 341714 16001238 ~ 16004425 (+) True XLOC_027235
TCONS_00057684 lncRNA downstream 348699 16008223 ~ 16013451 (+) False XLOC_027236
TCONS_00057685 lncRNA downstream 348792 16008316 ~ 16023375 (+) False XLOC_027236
TCONS_00057686 lncRNA downstream 359502 16019026 ~ 16023375 (+) False XLOC_027236
TCONS_00053628 mRNA upstream 545968 15011341 ~ 15059876 (+) True XLOC_027222
TCONS_00053626 mRNA upstream 594953 15006217 ~ 15010891 (+) False XLOC_027221
TCONS_00053625 mRNA upstream 614918 14981854 ~ 14990926 (+) True XLOC_027220
TCONS_00053624 mRNA upstream 625907 14971239 ~ 14979937 (+) True XLOC_027219
TCONS_00053622 mRNA upstream 637203 14957417 ~ 14968641 (+) False XLOC_027218
TCONS_00053636 mRNA downstream 160204 15819728 ~ 15840799 (+) True XLOC_027227
TCONS_00053637 mRNA downstream 229913 15889437 ~ 15940249 (+) False XLOC_027229
TCONS_00053638 mRNA downstream 229915 15889439 ~ 15966260 (+) False XLOC_027229
TCONS_00053639 mRNA downstream 240144 15899668 ~ 15916287 (+) False XLOC_027229
TCONS_00053640 mRNA downstream 282551 15942075 ~ 15943847 (+) True XLOC_027230
TCONS_00053633 other upstream 385177 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053631 other upstream 530112 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053630 other upstream 531020 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053629 other upstream 531181 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053616 other upstream 872721 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053646 other downstream 328863 15988387 ~ 15991090 (+) True XLOC_027234
TCONS_00053651 other downstream 392076 16051600 ~ 16055777 (+) False XLOC_027237
TCONS_00053652 other downstream 401032 16060556 ~ 16064736 (+) False XLOC_027237
TCONS_00053668 other downstream 1239117 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 1402456 17061980 ~ 17062097 (+) True XLOC_027258

Expression Profile

//