RNA id: TCONS_00053637


Basic Information

Item Value
RNA id TCONS_00053637
length 5167
RNA type mRNA
GC content 0.53
exon number 64
gene id XLOC_027229
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15889437 ~ 15966260 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGCCGTACAGCCATGCCTGCTGATATAGTGTTTCTGGTGGATGACTCCTGGTCAGTCGGACCGACCAGTTTCCAGCAAATCAAAGAGTTCATAGCGGACATCATCCGAGCCTTCCAGGGAAATGTGTTCGGACAGGAAGGCATTCGCTTTGGGGTGACCGTCTATTCAGACTTGCCCAGGATGCGTATCGCTCTGACGGATTATTCCACTCTGGATGAGGTGCTGCGGGCCGTGGAGGACGTGCCGTATGAGGGGGGCAGCAGCCGCACTGGCCTGGCATTGGAGTTCCTGGAGGAGTCTGTGTTCAGTCCTTCTATCATCAGAGAAAGCGCCCCAAAGATTGCTGTCCTGATCACTAATGGCCAATCTGATGATCAAGTGGACGATCCAGCCAAAGCTGTAGCAGACAGTGGGATTTCACTGTTTGCAGTTGGGGTGAGGAATGCCGATCAGTCTGAGCTGAAGAAGATCGTCACAGAGCCTCATGAGGAACATCTGATGCTCAGTCCAGACTTCTCCTTCCTGGAGCATCTGCTGCCCAAACTCTCTCGCCGCATCTGCTTCACTGCTTCGGAACCACCTCGACCTGTTAAACAAAAGCCGCCAGTGGTGGAAAGGATAATCGGGCCTAAAGATCTGCAAGTGAGTGAGCTGAGCTACAGCTCTCTACAGCTGACCTGGAGTCAGGCCACAGGAGACGTTACCGGCTACAGGCTGCTCATCACCCCTGTGTCTCCAAAGGGCCATCTGCTTCCTGCACAGCAGACGCAGATTGATCTAAAGGGAGATATCAGTAGTACTCCAGTAACCGGGTTGAATCCGAAGACTGAATATTCTCTCAGTGTGTACGCCATCTATCCTGGACGCATTGGAGAGTCTGCTACTGTTGCCACAGTAACCATGAAATTGGTGCCAGTCGGTGATTTGCTGGTGCAGAACGCCACTACAGACACAGTTCAGGCCCGCTGGTCATCTGTCCGAGGCGCTACAGGATACAGACTCACCTGGTCATCCTCAGAGGGACACATAGAAAATGTGAACCTGGGAGACAACTTTAATTTCTACATGGTGCAGGGGCTTCATGCTGGCACTGAATACACTATCACTATTAACCCTATATTCGGGGACATTGAGGGACCTGTGACCTCTGCCAAAGCCAAGACtggagAGCAGCGCAGTTCAGACTCTGCGAGCGTCAGCTGTAAGCACCAGCAGCGCTGTCACTTCTTGGAACTCAGTACCCGGAGCCACGGGATACAGACTGGCCTGGGGCCCGACAGCAGATTAATTTCTccttgtgttttgtgtgtgtgcgtagaGTTCACAGGCAGAGATCGGCCGAGGCAGCTGGCTCTGAATGGCAGCACTACtgaatatattctgaagaatctGGTTCACGACACAGAGTATGTGCTTTCTCTATATGTGCTCTTTGGCTCAGTGGTCGGTCCGGGCATCACTGCTACATTCAGGACTTCTCCTCTCGGATACGTCTCAAATTTTAAAGTGACTTCATACACCAGCTCATCCATTCACGTGGAATGGAGTCCTATTGTAGGAGCCACCGAATACAAACTCACCTGGAGTTCAGAATTCATTCGTCCTCAGAGCCGTTATCTGGACCGTAGCGTTTTGAAGCACAGCATCACTGGTCTTCagccaaacacactttattctGTCAGCATTCACGCTCTCTACAGCAACACGGAAGGGCCAGATATCACCCTCTCACAGCAGACAGCCTCTTTGACCGACTCCGAGCTGATCGAGACAGTTCGCGAGGTGAAGGTTGTGGACACTGGCGTCAGCTCTTTCAAACTGGCATGGAAGAAAACACCAGGCGTCACTGGCTACAAAATCACCTGGAGCCCCTTCCACGGTGGAGAGAAGAAGAGTGAGGCCGTGTCTTCTTCTGCCACTTCCTTCACCATCACTGATCTGCCAGCCGGTTCTGCCTACAAGATCCAGCTTTCTGCAATGGTCAGAAGCAAAGAGGGAAGTCCAGTAATGGTGACCGCTCGCACTCTGGATCTGCCCAAGGTGACTGGATTCAGTGCTCTGAACACCACAGACAACAGCACTGTATTAAACTGGACGAGTGTGACTGGAGTCTCGGGATACCTGCTGTCCTGGAGACACATATCTGAGGTGGACGTGTCCACTGATCTGCTGAGCTCTGGCTTCACCTCGTATAAGATCCGAGATCTCCAGTATGGCAGAACCTACATCTTTTCCATCAGGCCACTTTATGGGGAAGTGGAGGGTCCGGTCACAACCATCACCAAAAGAATCTTGGGAGAGCCTCGTCTTGTTCCTGTCCAGAGCTCCACACCGGCTCCTGTCTCTGCAAACACCAAGAGCAATGACATGCATCTCCAAACCACAACCAGAAACACTCGTACCCCAGTGGTCAAAGCCCCTGTTACAGCCTCTGCCACCGGCCAAACGGCTTCAGCACTGATTAGAATGACCACAGTCAATGACCAAAGCATCCTGTCTGCTGAAACACCTCCACCTGGACCAGTGTGTGGCAGGGTAAAGGCAGATATTGTGTTTCTGGTGGATGAATCCTGGAGCATTGGTACTAATAATTTTGGAAAGCTGAAGGATTTCCTATTCAGAACGGTCACCTACTTCCCCTCTATAGGACCTAAGGGAACGCAGATAGCAGTAGTTCACTACAGTGATCAACCCAGGATCGAGTTCAACTTCAACACTCATAAAGACCGTAACTCCGTCTTAAGAGCTCTCCGAGAAGTCCGCTATGGAGGAGGAAACACAAAAACAGgtcgTGGGATCAGTTATGTCCTCAGGGAGATGTTTCAGGAGTCTTTGGGAATGAGACAGGAAGCTCCTCATGTGTTGGTGCTGTTGACGGATGGAAGAGCACAGGATGATGTGGAGCCGCCATCCAGGATAGCGCACGCTTTGGGGGTCAGTGTGTTGGTCATCGGCATCGCTCACGCCGACATGGAGGAGGTGAGGACAATCGCGTCTCCCACCACATACAAGAACATCTTCTACGCCAGTGATTTTGACGACCTCCCATCCATCGAGAGAGAGTTCATCGGTAGCATTTGCAGCGAAGCCCTGCAGTCCGAATTTAAACAACACGACGAGTCTGCTCAACTGGACACACCTACAGAAGACCCAGAAGCTCTTGCTAAACCAGAAGGACCTTGTCCGCTTAACTGCAAGGGTCAGAAAGGAGAAAAGGGCGATGGGTTTGGTCATGGAGGCCTGCGGCTCCAGCAAGGCCCAGGGCATTTTGACTCATTCTCTCTGAAGGTTAAAGGAGAAAAGGGTGAGCGGGGTCTTCCCGGGACTGATGGTATTCCAGGTTTACCAGGACGGCCAGGCAGAACTGGACCACCTGGTTCTCCTGGACAAAGGGGGCCTTCTGGAATTCCCGGAGACATGGGGCCTCCTGGTAATACTGGACCTAAAGGACAGAGAGGAGAGAGAGGTGAGCCAGGCTATGTGATGGGAGGTATGGAGGTTCTTCCAGGCCGTAAAGGAGAACCCGGATCCTCAGGCCCTTCAGGTGCTCCTGGGGTCCCAGGGGTATCTGGTCCTCCAGGACTGCCTGGTCTTCCTGGGCCTTCAGGGTCTCCAGGACTCTCTATTAAGGGGGAGTCTGGAGAACCTGGTCCTAAAGGTCCACGTGGAAAACCAGGTCAAAAAGGAGAGAAAGGAGAGCAGGGGAATAATGGTTTGCCAGGTTTACCAGGACCAGTGGGAGTGGATGGACTTCCAGGACTTGCTGGCCAGAAGGGGGAAAAGGGACAGGACGGTATTGGAACACAAGGTGCTCAAGGTCCACCTGGACCACCTGGAGAAAAGGGAAACACTGGACTCTCAGGCTCAAAGGGTGAAGTAGGAATCCAAGGACTCCAAGGGATCGCAGGCCCTCGGGGGAAAAAGGGTCTTAAAGGAGATCAAGGAGAGAAGGGTGCACAGGGGGAAAATGGGCCGATCGGGTCTCCAGGAATAGCAGGCTTCCCTGGAGCTGCTGGACGAAAGGGCGATGAGGGGCAACGTGGCGCTCCCGGCGAGCCAGCTAAAGGGATACTTGGTCCTCCAGGGAAAAAAGGTGCCAGGGGGGATATCGGGCTAGTTGGGCCACCAGGACCGCAAGGAATCAAAGGAGATCGAGGTGataaaggtgaaaagGGCAATCCGGGATTTGGAATCCCTGGTCAGCCTGGTCCCAAAGGAGAAAGTGGAGAAAGAggCAATGTTGGACTATCAGGAAAACCAGGGCCTAAAGGCAATGATGGGTCCAAAGGAGACAAAGGAGAGATCGGTTTACCAGGCACCTCAGGTTCTCCAGGACTAAGAGGTAAAGATgGTGTGCCAGGCCTAAAAGGGGACACAGGATCAAGGGGAGAACCTGGTTCTCGAGGAGAGCCTGGAGATAGGGGTGTTAAGGGTCCGGAGGGACACAAAGGATTGAAAGGCGAGCCGGGATTGCCGGGACCACCGGGAGTTACTCAATTTACCACATCAGACAACACCGTTCTCACCAGGGCCATTAAGGGTGAACCTGGTGAATCTGGGCTCCCTGGACCACCGGGGGAGACAGGACGTCCTGGACCACCTGGTCCTGAAGGTAAACCAGGACCTCCAGGAAATTCACTGTTTGGATCAAGTACAGGGAAAGACGGTCTGGATGGTCTGCCAGGAATCCCTGGATCTAAGGGTGAAGCCGGACAGAAAGGTGAACCAGGATCAaaAGGAGAGAAAGGAGATCACGGACGTGCTGGGATTACTGGTATGCCTGGTTTACCTGGGACACCTGGTAAACCTGGTGTTGATGGGAAGCGTGGAGTTTCTGGAAAAGATGGAGAACGAGGACCAAAGGGTGATGAAGGAGAAAAGGGTGTAAAAGGTGAACCTGGTGCAAATGGAAATGAAGGTCAAAAAGGAGAGCAAGGATCTCCAGGATTGCCAGGTCCTCCTATTGTCCTACAGGAGGGCATGTCGATTGAGGACATGAAAAAGGCATTTCCCTTACCGATGGGACCTCCTGGCGCGACAGGCCCTCCTGGGATGAAGGGAGAGAAAGGAGAGATGGGTTTGAAAGGAGAAAAGGGGGATGCTGGCGCACCTGGGAGAGCGGTTGAAATGAAGGACATTGAAGGCTTGTTCGATTCGTATGGCAT

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9861 Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including central nervous system; ectoderm; endoderm; integument; and pharynx.

Ensembl:

ensembl_id ENSDART00000141566

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057139 lncRNA upstream 8293 15869212 ~ 15881144 (+) True XLOC_027228
TCONS_00057679 lncRNA upstream 648724 15207436 ~ 15240713 (+) False XLOC_027225
TCONS_00053647 lncRNA downstream 60989 16001238 ~ 16004425 (+) True XLOC_027235
TCONS_00057684 lncRNA downstream 67974 16008223 ~ 16013451 (+) False XLOC_027236
TCONS_00057685 lncRNA downstream 68067 16008316 ~ 16023375 (+) False XLOC_027236
TCONS_00057686 lncRNA downstream 78777 16019026 ~ 16023375 (+) False XLOC_027236
TCONS_00057688 lncRNA downstream 78953 16019202 ~ 16023375 (+) False XLOC_027236
TCONS_00053636 mRNA upstream 48638 15819728 ~ 15840799 (+) True XLOC_027227
TCONS_00053635 mRNA upstream 72897 15605844 ~ 15816540 (+) True XLOC_027226
TCONS_00053634 mRNA upstream 229913 15605844 ~ 15659524 (+) False XLOC_027226
TCONS_00053628 mRNA upstream 829561 15011341 ~ 15059876 (+) True XLOC_027222
TCONS_00053626 mRNA upstream 878546 15006217 ~ 15010891 (+) False XLOC_027221
TCONS_00053640 mRNA downstream 1826 15942075 ~ 15943847 (+) True XLOC_027230
TCONS_00053641 mRNA downstream 3996 15944245 ~ 15944867 (+) True XLOC_027231
TCONS_00053642 mRNA downstream 14044 15954293 ~ 15964030 (+) True XLOC_027229
TCONS_00053643 mRNA downstream 28234 15968483 ~ 15974910 (+) True XLOC_027232
TCONS_00053644 mRNA downstream 40847 15981096 ~ 15981539 (+) True XLOC_027233
TCONS_00053633 other upstream 668770 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053631 other upstream 813705 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053630 other upstream 814613 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053629 other upstream 814774 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053616 other upstream 1156314 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053646 other downstream 48138 15988387 ~ 15991090 (+) True XLOC_027234
TCONS_00053651 other downstream 111351 16051600 ~ 16055777 (+) False XLOC_027237
TCONS_00053652 other downstream 120307 16060556 ~ 16064736 (+) False XLOC_027237
TCONS_00053668 other downstream 958392 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 1121731 17061980 ~ 17062097 (+) True XLOC_027258

Expression Profile

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