RNA id: TU2210345


Basic Information

Item Value
RNA id TU2210345
length 592
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1932278
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41013334 ~ 41014043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACATACTCGCTGTgtattatcaatgcatagtccctttacccctaactgcatgtacaaattaccttgactaacccctgcacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaacggtaccccctgtatatagcctccacattgactcagtaccggtaccccctgtatataacctccacattgactctgtactggtcccccctgtatatacctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatataacctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctataccggtaccccctgtatatagcctccacattgactctataccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatataacctccacattgactctgtaccggtaccccctgtatatagcctccacattgactcagtaccgtaacaccctgtatataacctccacattgactcagtaccggtaccccctgtatataacctccacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210321 lncRNA upstream 6692 41006288 ~ 41006642 (+) True G1932269
TU2210312 lncRNA upstream 10893 41002220 ~ 41002441 (+) True G1932260
TU2210302 lncRNA upstream 20504 40992589 ~ 40992830 (+) True G1932250
TU2210301 lncRNA upstream 22256 40990849 ~ 40991078 (+) True G1932249
TU2210288 lncRNA upstream 30511 40982230 ~ 40982823 (+) True G1932238
TU2210352 lncRNA downstream 6542 41020585 ~ 41020816 (+) True G1932284
TU2210355 lncRNA downstream 11262 41025305 ~ 41025520 (+) True G1932287
TU2210378 lncRNA downstream 75272 41089315 ~ 41129264 (+) True G1932310
TU2210381 lncRNA downstream 78897 41092940 ~ 41093947 (+) True G1932313
TU2210389 lncRNA downstream 105796 41119839 ~ 41120390 (+) True G1932321
XM_021581568.2 mRNA upstream 40955 40962442 ~ 40972379 (+) False LOC110503202
XM_021581569.2 mRNA upstream 40955 40962699 ~ 40972379 (+) True LOC110503202
XM_021581580.2 mRNA upstream 175833 40810178 ~ 40837501 (+) False LOC110503211
XM_036961741.1 mRNA upstream 175833 40812827 ~ 40837501 (+) True LOC110503211
XM_036961742.1 mRNA upstream 175902 40810178 ~ 40837432 (+) False LOC110503211
XM_036961525.1 mRNA downstream 15748 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA downstream 15749 41029792 ~ 41125378 (+) True si
XM_036961569.1 mRNA downstream 252724 41266767 ~ 41267279 (+) True LOC118944044
XM_036961130.1 mRNA downstream 1009439 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 1126026 42140069 ~ 42240339 (+) False LOC110503413
TU2209850 other upstream 451428 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 907802 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 935002 40076476 ~ 40078332 (+) True G1929909
TU2207252 other upstream 960984 40049364 ~ 40052350 (+) False G1929901
TU2207223 other upstream 984817 40025935 ~ 40028517 (+) False G1929891
TU2210387 other downstream 100594 41114637 ~ 41117412 (+) True G1932319
TU2210655 other downstream 316007 41330050 ~ 41338188 (+) True G1932564
TU2211289 other downstream 1280805 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 1347213 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 1375384 42389427 ~ 42390261 (+) True G1933255

Expression Profile