RNA id: TCONS_00053645


Basic Information

Item Value
RNA id TCONS_00053645
length 2977
RNA type mRNA
GC content 0.49
exon number 23
gene id XLOC_027234
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15983541 ~ 15996191 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTCCGCCAGCTCACAACGTACGTCACACTAGTTGACGTGGAGGAAAAGAGCGTGAATGACTGTCTGATCATTTCGCTTACTGCTCTCAAACATTCCGCAAAATGATCAAGAAATTCGACAAGAAGGACGAGGAGTCTGGAAGTGGCTCAAACCCCTTTCAGCATTTGGAGAAGAGCGCTGTACTACAGGAGGCTCGGATCTTTAATGAGACGCCTATAAATCCAAGAAGATGTCTGCATATCCTGACCAAGATCATTTACCTGCTCAACCAGGGTGAGCATTTTGGAACCACAGAAGCCACTGAAGCTTTCTTTGCCATGACAAGGCTGTTCCAGTCTAATGATCAAACCCTGAGAAGAATGTGCTACCTGACCATAAAGGAGATGGCCAACATCTCAGAGGATGTGATCATTGTTACAAGCAGCTTGACAAAGGACATGACTGGCAAAGAGGACGTTTATAGAGGACCAGCAATCAGAGCTCTCTGCAGGATCACTGATACCACAATGTTGCAGGCTATTGAACGATACATGAAACAGGCCATTGTGGACAAAGTGCCCAGCGTCTCCAGCTCTGCTTTGGTTTCATCACTAcatATGGTGAAGATGAGCTTTGATGTTGTAAAACGCTGGGTCAATGAAGCGCAGGAGGCGGCATCGAGTGATAACATTATGGTGCAGTATCATGCTCTGGGTCTTTTGTACCACCTGAGGAAGAATGATCGTCTCGCTGTGACCAAGATGCTTAATAAATTCACCAAATCTGGTCTGAAGTCTCCGTTTGCATACTGCATGATGATTCGCATTGCCAGTAAACTGCTGGAGGAGACGGAGGGAGGGCATGACAGCCCACTGTTTGACTTCATTGAGAGCTGCCTGAGGAATAAACATGAGATGGTTGTTTATGAAGCAGCCTCTGCCATCGTCCACATGCCCAACTGTACTGCCCGTGAGCTGGCTCCTGCTGTATCTGTTCTCCAGCTGTTCTGCAGCTCTCCCAAAGCAGCACTCCGATATGCAGCAGTGCGGACTCTTAATAAGGTGGCGATGAAGCACCCGTCAGCAGTGACCGCATGCAACCTGGACCTGGAGAATCTGATCACTGACTCCAACCGCAGCATCGCCACCCTGGCCATCACCACCCTGCTGAAGACCGGCAGCGAGAGCAGTGTAGACCGCCTCATGAAGCAGATCTCCTCCTTCGTCTCCGAGATCTCAGATGAGTTCAAGGTGGTTGTGGTCCAGGCCATCAGTGCTCTGTGCCAGAAGTATCCGAGAAAGCACAGCGTAATGATGAACTTTCTCTCAAACATGCTGCGAGACGATGGTGGCTTCGAGTACAAGAGGGCCATTGTAGACTGCATCATCAGCATCATCGAGGAAAACCCGGAGAGTAAAGAAACCGGTCTGGCCCACCTGTGCGAGTTCATCGAGGACTGCGAGCACACCGTCCTGGCCACTAAAATTCTCCACTTGCTGGGGAAAGAGGGTCCTCGTACCCCTACACCCTCCAAATACATCCGCTTCATCTTCAACCGTGTGGTGCTGGAGAGCGAAGCGGTTCGGGCCGCTGCTGTTAGCGCCTTGGCCAAGTTTGGGGCTCAAAACGATGACCTGCTGCCAAGCGTCTTGGTCCTGATGCAGAGGTGTATGATGGACAGTGATGATGAAGTGAGAGATAGAGCCACATTCTACATGAACGTCCTTCAGCAGAAGCAGAAGGCCCTGAATGCTGCTTACATCTTCAATGGTCTGTCTGTATCAGTTCTCGGACTGGAGAAATCCCTCCACCAGTACACTCTGGAGCCCTCCGAGAAGCCATTTGACATGAAGACAGTTCCCTTGGCTACTGCGCCCATTACTGAACACAAAACAGaaatTGCTCCTGTGGCAACAAGCAAACTACCCGAAAAGCTTGCGCCTTCACGCCAAGACATTTACCAAGAGCAACTTTCAGCCATCCCAGAATTCCAGGGCCTGGGTCCCCTGTTCAAGTCTTCCGAGCCGGTGCAGTTAACAGAAGCAGAGACGGAGTATGTGGTGCGCTGCATCAAACATACTTTCGCgaatcacatgatctttcagtTCGACTGCACCAACACGCTGAACGACCAGCTGCTGCAGAAGGTTCTGGTCCAGATGGAACCATCGGAGTCATACGAAGTGCTCCATTACGTACCTGCAGCCAATCTTCCCTACAGCCAGCCCGGCTCCTGCTACAGCCTCGTCCGGTTACCGGAGGATGACCCCACCGCAGtcTCTTGCACATTCAGCTGTACAATGAAATATCTGGTGCGGGATTGTGATCCTAACACAGGAGAGCCTGATGATGACGGTTACGATGATGAATATGTGCTGGAAGATTTAGAGGTGACGGTCGCCGACCACATACAGAAAGTGCTCAAACCGAACTTCGCTGCAGCATGGGACGAGGTCGGAGACGAGTGTGAGAAGGAAGAGACGTTTGCTCTGGCCACAGTCAGAACTCTAGATGAGGCAGTAAATAACATCGTCAGCTTCTTGGGCATGCAGCCTTGTGAGCGTTCAGACAAAGTTCCGGAAAACAAGAACTCGCATGTTCTCTTCCTAGCAGGTGTGTTTCGAGGAGGTCATGATGTGTTGGTGAGGGCTCGTTTGGCTCTGGCTGATGGCGTCACTATACAGGTGACTGTCAGGAGCACAGATGACAACGTGGTGGACGTCATCCTAGCATCTGTGGGCTAAACAAGCGATGTTATGATGCCAATCAGTCTCAGTCATTGTCCTTTTATATATGTATCTACATAGAAGCTCTATAATATTTCTCATCACCATCCTCTGAGACATCCTGTTTCTGCATTAAATCTCTTTCGGAGATGTTTCTAAATTATGTTGTGCCACTTTAATTCAAGAGATCTTATGATAATTCCCTCTTTGGCATTTGATGGCAGTACTTTTcatttatcaataataaaaacagcCCCAAAGAGTACCAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0009306 protein secretion biological_process
GO:0072384 organelle transport along microtubule biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000208-8 Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2).

Ensembl:

ensembl_id ENSDART00000043660

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057139 lncRNA upstream 102397 15869212 ~ 15881144 (+) True XLOC_027228
TCONS_00057682 lncRNA upstream 742828 15217910 ~ 15240713 (+) False XLOC_027225
TCONS_00057683 lncRNA upstream 742828 15217927 ~ 15240713 (+) False XLOC_027225
TCONS_00057680 lncRNA upstream 762564 15207440 ~ 15220977 (+) False XLOC_027225
TCONS_00053647 lncRNA downstream 5047 16001238 ~ 16004425 (+) True XLOC_027235
TCONS_00057684 lncRNA downstream 12032 16008223 ~ 16013451 (+) False XLOC_027236
TCONS_00057685 lncRNA downstream 12125 16008316 ~ 16023375 (+) False XLOC_027236
TCONS_00057686 lncRNA downstream 22835 16019026 ~ 16023375 (+) False XLOC_027236
TCONS_00057688 lncRNA downstream 23011 16019202 ~ 16023375 (+) False XLOC_027236
TCONS_00053644 mRNA upstream 2002 15981096 ~ 15981539 (+) True XLOC_027233
TCONS_00053643 mRNA upstream 8631 15968483 ~ 15974910 (+) True XLOC_027232
TCONS_00053642 mRNA upstream 19511 15954293 ~ 15964030 (+) True XLOC_027229
TCONS_00053641 mRNA upstream 38674 15944245 ~ 15944867 (+) True XLOC_027231
TCONS_00053640 mRNA upstream 39694 15942075 ~ 15943847 (+) True XLOC_027230
TCONS_00053654 mRNA downstream 319501 16315692 ~ 16319762 (+) True XLOC_027240
TCONS_00053655 mRNA downstream 327779 16323970 ~ 16347126 (+) True XLOC_027241
TCONS_00053656 mRNA downstream 713810 16710001 ~ 16725063 (+) False XLOC_027244
TCONS_00053657 mRNA downstream 719076 16715267 ~ 16725144 (+) True XLOC_027244
TCONS_00053658 mRNA downstream 729769 16725960 ~ 16742893 (+) True XLOC_027245
TCONS_00053633 other upstream 762874 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053631 other upstream 907809 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053630 other upstream 908717 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053629 other upstream 908878 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053616 other upstream 1250418 14732983 ~ 14733123 (+) True XLOC_027213
TCONS_00053651 other downstream 55409 16051600 ~ 16055777 (+) False XLOC_027237
TCONS_00053652 other downstream 64365 16060556 ~ 16064736 (+) False XLOC_027237
TCONS_00053668 other downstream 902450 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 1065789 17061980 ~ 17062097 (+) True XLOC_027258
TCONS_00053686 other downstream 1357549 17353740 ~ 17363070 (+) False XLOC_027263

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000020_02638385_02646586.mRNA True 2924 mRNA 0.50 23 CI01000020 2638083 ~ 2646586 (-)
bowfin (Amia calva) AMCG00012874 True 3659 mRNA 0.48 24 CM030125.1 11249118 ~ 11259131 (-)