RNA id: TU2210514


Basic Information

Item Value
RNA id TU2210514
length 457
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1932436
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41178759 ~ 41179215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATGTCTACAGTGGCTCAGTGCAGAGACATAGAGAGCCTACAGACTAGAGACTGACTTCAGCAGAACAGTCCATTGGGTTCTACTGCAAACCAGACAGCAGAGTGATGTATATAAGCTGTAACACATAAATTAAATCAACACTGCCAATTGGCCAATACCCATGAGTATGGTTATGAATatgtttttcatttttcatttgagGGTAGCATCTAATCAAATTGTTCCACATGTTGATTCCGTGTCCTTGAACTTGTTTTTTTATCCACCAGTTGAGAATGAAAGCCAACTGTCTTTGCTCAGATGGGACAATATAATGCTGACCCAGTAACGGTCTTTACTCAGATGGGACAATACAATGCTGACCCAGTAACTGTCTTTACTCAGATGGGACAATACAATGCTGACCCAGTAACTGTCTACTCAGATGGGCCAATACAATGCTGACCCAGTAACG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210506 lncRNA upstream 13845 41164689 ~ 41164914 (+) True G1932428
TU2210499 lncRNA upstream 25352 41153124 ~ 41153407 (+) True G1932421
TU2210498 lncRNA upstream 26393 41152155 ~ 41152366 (+) True G1932420
TU2210494 lncRNA upstream 28824 41149694 ~ 41149935 (+) True G1932416
TU2210488 lncRNA upstream 35688 41142865 ~ 41143071 (+) True G1932410
TU2210515 lncRNA downstream 110 41179325 ~ 41179635 (+) True G1932437
TU2210520 lncRNA downstream 4304 41183519 ~ 41183728 (+) True G1932442
TU2210526 lncRNA downstream 16031 41195246 ~ 41211692 (+) True G1932447
TU2210568 lncRNA downstream 40202 41219417 ~ 41219784 (+) True G1932489
TU2210716 lncRNA downstream 178855 41358070 ~ 41358345 (+) True G1932614
XM_036961527.1 mRNA upstream 53381 41012678 ~ 41125378 (+) False si
XM_036961525.1 mRNA upstream 53381 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA upstream 53381 41029792 ~ 41125378 (+) True si
XM_021581568.2 mRNA upstream 206380 40962442 ~ 40972379 (+) False LOC110503202
XM_036961569.1 mRNA downstream 87552 41266767 ~ 41267279 (+) True LOC118944044
XM_036961130.1 mRNA downstream 844267 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 960854 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 960854 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 960854 42140069 ~ 42335470 (+) False LOC110503413
TU2210387 other upstream 61347 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 616853 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 1073227 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 1100427 40076476 ~ 40078332 (+) True G1929909
TU2207252 other upstream 1126409 40049364 ~ 40052350 (+) False G1929901
TU2210655 other downstream 150835 41330050 ~ 41338188 (+) True G1932564
TU2211289 other downstream 1115633 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 1182041 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 1210212 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 1316365 42495580 ~ 42500990 (+) True G1933563

Expression Profile