RNA id: TU2210520


Basic Information

Item Value
RNA id TU2210520
length 210
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1932442
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41183519 ~ 41183728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctttatggaacaaaaggaacatttattgtgtaactgggagtctcgtgagtgcaaacatccgaagatcatcaaaggtaagcgattcatttgattgcttttctgactttcgtgaccaatctactttgctgctagctgtttgtaatgttttgtctgctgagagagatgtcctaacataaacgcttggatagctaagctaagctgtgttttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210515 lncRNA upstream 3884 41179325 ~ 41179635 (+) True G1932437
TU2210514 lncRNA upstream 4304 41178759 ~ 41179215 (+) True G1932436
TU2210506 lncRNA upstream 18605 41164689 ~ 41164914 (+) True G1932428
TU2210499 lncRNA upstream 30112 41153124 ~ 41153407 (+) True G1932421
TU2210498 lncRNA upstream 31153 41152155 ~ 41152366 (+) True G1932420
TU2210526 lncRNA downstream 11518 41195246 ~ 41211692 (+) True G1932447
TU2210568 lncRNA downstream 35689 41219417 ~ 41219784 (+) True G1932489
TU2210716 lncRNA downstream 174342 41358070 ~ 41358345 (+) True G1932614
TU2210729 lncRNA downstream 183592 41367320 ~ 41367695 (+) True G1932627
TU2210766 lncRNA downstream 240511 41424239 ~ 41429949 (+) True G1932663
XM_036961527.1 mRNA upstream 58141 41012678 ~ 41125378 (+) False si
XM_036961525.1 mRNA upstream 58141 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA upstream 58141 41029792 ~ 41125378 (+) True si
XM_021581568.2 mRNA upstream 211140 40962442 ~ 40972379 (+) False LOC110503202
XM_036961569.1 mRNA downstream 83039 41266767 ~ 41267279 (+) True LOC118944044
XM_036961130.1 mRNA downstream 839754 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 956341 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 956341 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 956341 42140069 ~ 42335470 (+) False LOC110503413
TU2210387 other upstream 66107 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 621613 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 1077987 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 1105187 40076476 ~ 40078332 (+) True G1929909
TU2207252 other upstream 1131169 40049364 ~ 40052350 (+) False G1929901
TU2210655 other downstream 146322 41330050 ~ 41338188 (+) True G1932564
TU2211289 other downstream 1111120 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 1177528 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 1205699 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 1311852 42495580 ~ 42500990 (+) True G1933563

Expression Profile