RNA id: TCONS_00057685


Basic Information

Item Value
RNA id TCONS_00057685
length 1663
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id XLOC_027236
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16008223 ~ 16023375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGATgcgtttttagttttatttattttaaatcacatCTGTGATCTTCTTTAAATGGTCTCGAGCAGCAGATAAACATGGCATCTAACGGATGATCAGCTTCCCAACTGAAGGGGATAAGGTTGTTTGGAGCAGCACACTCATCCAGCAGAAGCATGTGGATAGAAATTGACAGTAATGATGCTCATCTGCTGATGGACCGgCGGTGAGGGTGCTAcatgtatgaatggaagtctatggggagaaaagtgcagtgtgcaGTGAGAGCTTGAGGCTTTCCGGAAACATCCTTCAGTTTAGAGTCAGTTTGAGAAAGGGGCGTGTTTGGTGCATCAACACTCATCCAGCAGAAGCATGTGGACAAGAGCAGAACTACTGCTAGACATGATTTGGTTGCTCAGTGGGGACGCCCTGATCCCCCACACCTTCTCACTCACTGTTCAACTGTTATGTTCCCTGTATTTATACTAAAAACTGCTAAAGTTACTAGTCTAACAGGGTCTTGAACCCTTTGGACCACAACACAACCTTGTCTTCAATACCCAGCGGAGCCAACATGGCCAACACGAGACCCAATCTGAAGTGTATTTAAGTACACTGGCGCTAATTACAATTCATAAAGTGCAGTCTTTAAGCATAATCAAGCTTTCAATGTTTCTGATGCTTAAGTGACAACACAACTCACCTGTAAGTCTTccttgcttatatatatattatttaagtatAATGCTGCTGCAGAGCTCATTTAGACTTTGTTTTCATGCTGCTCTATTGCTGAATTGTCAGACTTTCAGAAAATCAAACACATTGCTTGTTGTTCCCTAACTTATAATCTCATCATCATATTTCCAGtcacacaaaaaaagacatcAATCCATGTGTCTTTAGGAGAAATGCTGTTTAACATTTATATACTATTCTAGTTGACTTTATATCACTTAGACtgtaaaaatatctataaattagcagatttttataatttgtgattcatgtttttatttttccccatttatttatgtttttgaatagCATTATGGGACATTGATCATTCCTACAACAACTTTTACCctttgaaaatttaaaaaaagtgacttatcggcattttgaatagtttaaagtgacttaccagtacattttctgtctttttacagacttatttctctatatattatttcttatattcaTTCaagactactaaaatgtcaataaaagtcactttattaaactttAGAGTTGAATTtgcaacatcaaaagtggacaaagCGGAGATCAacattccataatgcaattcacaactgaatacagaaaacacttgtgaatcgcTAAATACTGACACTGTTAATTAACAAGTAAGGTGCTCTTACTTGGGAACCACACATCTCATGTTCGGACACATGAAGGAACTTTATTTCACCTGTCAGTGGCCTGAGCTCACATAATAAAGCAGTAAAACTGACTTGTTTGATACTCTGAACTGGGGTTTGAACATGTGACTCCATCACAGCCTTGTCTTTAAGTAAGATGTGCTTAACCAATGGAGCCAGAAAAGAAATCATCATGTTTTCTAACTTTGTTTTATGtactaatagtttaataaagttttaatcaaatatataaaCTTATGTTTTTTGTGCTTAACCTCATCCTTGCTCCATAACAGCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053647 lncRNA upstream 3891 16001238 ~ 16004425 (+) True XLOC_027235
TCONS_00057139 lncRNA upstream 127172 15869212 ~ 15881144 (+) True XLOC_027228
TCONS_00057682 lncRNA upstream 767603 15217910 ~ 15240713 (+) False XLOC_027225
TCONS_00057683 lncRNA upstream 767603 15217927 ~ 15240713 (+) False XLOC_027225
TCONS_00057681 lncRNA upstream 787339 15207448 ~ 15220977 (+) False XLOC_027225
TCONS_00057689 lncRNA downstream 13793 16037168 ~ 16046900 (+) False XLOC_027237
TCONS_00057690 lncRNA downstream 18804 16042179 ~ 16073706 (+) False XLOC_027237
TCONS_00053650 lncRNA downstream 18864 16042239 ~ 16046900 (+) False XLOC_027237
TCONS_00057140 lncRNA downstream 20368 16043743 ~ 16071184 (+) False XLOC_027237
TCONS_00057691 lncRNA downstream 20782 16044157 ~ 16073706 (+) False XLOC_027237
TCONS_00053645 mRNA upstream 12125 15983541 ~ 15996191 (+) False XLOC_027234
TCONS_00053644 mRNA upstream 26777 15981096 ~ 15981539 (+) True XLOC_027233
TCONS_00053643 mRNA upstream 33406 15968483 ~ 15974910 (+) True XLOC_027232
TCONS_00053642 mRNA upstream 44286 15954293 ~ 15964030 (+) True XLOC_027229
TCONS_00053641 mRNA upstream 63449 15944245 ~ 15944867 (+) True XLOC_027231
TCONS_00053654 mRNA downstream 292317 16315692 ~ 16319762 (+) True XLOC_027240
TCONS_00053655 mRNA downstream 300595 16323970 ~ 16347126 (+) True XLOC_027241
TCONS_00053656 mRNA downstream 686626 16710001 ~ 16725063 (+) False XLOC_027244
TCONS_00053657 mRNA downstream 691892 16715267 ~ 16725144 (+) True XLOC_027244
TCONS_00053658 mRNA downstream 702585 16725960 ~ 16742893 (+) True XLOC_027245
TCONS_00053646 other upstream 17226 15988387 ~ 15991090 (+) True XLOC_027234
TCONS_00053633 other upstream 787649 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053631 other upstream 932584 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053630 other upstream 933492 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053629 other upstream 933653 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053651 other downstream 28225 16051600 ~ 16055777 (+) False XLOC_027237
TCONS_00053652 other downstream 37181 16060556 ~ 16064736 (+) False XLOC_027237
TCONS_00053668 other downstream 875266 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 1038605 17061980 ~ 17062097 (+) True XLOC_027258
TCONS_00053686 other downstream 1330365 17353740 ~ 17363070 (+) False XLOC_027263

Expression Profile

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