RNA id: TU2210766


Basic Information

Item Value
RNA id TU2210766
length 230
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1932663
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41424239 ~ 41429949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAACATAAAGAGGTAACACCaatacctggcaacataaagagGTAACACCaatacctggcaacataaagtggTAACACCaatacctggcaacataaagtgatgacatcaacacctggcaacataaagagGTAACACCaatacctggcaacataaagagGTAACACCaatacctggcaacataaagagGTAACACCAATGCCTGGCAACATAAAGAGGTAACACCaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210729 lncRNA upstream 56544 41367320 ~ 41367695 (+) True G1932627
TU2210716 lncRNA upstream 65894 41358070 ~ 41358345 (+) True G1932614
TU2210568 lncRNA upstream 204455 41219417 ~ 41219784 (+) True G1932489
TU2210526 lncRNA upstream 212547 41195246 ~ 41211692 (+) True G1932447
TU2210520 lncRNA upstream 240511 41183519 ~ 41183728 (+) True G1932442
TU2210885 lncRNA downstream 78957 41508906 ~ 41509158 (+) True G1932773
TU2210888 lncRNA downstream 82082 41512031 ~ 41512248 (+) True G1932776
TU2210890 lncRNA downstream 83077 41513026 ~ 41513250 (+) True G1932778
TU2210898 lncRNA downstream 95966 41525915 ~ 41526179 (+) True G1932786
TU2210901 lncRNA downstream 96718 41526667 ~ 41527541 (+) True G1932788
XM_036961569.1 mRNA upstream 156960 41266767 ~ 41267279 (+) True LOC118944044
XM_036961527.1 mRNA upstream 298861 41012678 ~ 41125378 (+) False si
XM_036961525.1 mRNA upstream 298861 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA upstream 298861 41029792 ~ 41125378 (+) True si
XM_021581569.2 mRNA upstream 451860 40962699 ~ 40972379 (+) True LOC110503202
XM_036961130.1 mRNA downstream 593533 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 710120 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 710120 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 710120 42140069 ~ 42335470 (+) False LOC110503413
XM_036961682.1 mRNA downstream 1293582 42723531 ~ 42785160 (+) True prdm10
TU2210655 other upstream 86051 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 306827 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 862333 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 1318707 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 1345907 40076476 ~ 40078332 (+) True G1929909
TU2211289 other downstream 864899 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 931307 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 959478 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 1065631 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 1101769 42531718 ~ 42534983 (+) False G1933574

Expression Profile