RNA id: TU2210898


Basic Information

Item Value
RNA id TU2210898
length 265
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1932786
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41525915 ~ 41526179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGGACTAATTCAGCAGGACTAATTAGCAGGACTAATTAGCAGGACTAATTCAGCTGTGAAGACAGGACTGAGTGTTATTTCTACTACACACTGGGACTAAATGTATAAAACACCGACATCGATATTTAGACATCCCTCATTACTGTGGACGTCCCTCATTATCATGGACATCCCTCATTACCATGGACATCCCTCATTACATTAGACATCCCTTATTACTGTGGACATCCCTGATTACCATGGACATCCCTCATTATCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210890 lncRNA upstream 12665 41513026 ~ 41513250 (+) True G1932778
TU2210888 lncRNA upstream 13667 41512031 ~ 41512248 (+) True G1932776
TU2210885 lncRNA upstream 16757 41508906 ~ 41509158 (+) True G1932773
TU2210766 lncRNA upstream 95966 41424239 ~ 41429949 (+) True G1932663
TU2210729 lncRNA upstream 158220 41367320 ~ 41367695 (+) True G1932627
TU2210901 lncRNA downstream 488 41526667 ~ 41527541 (+) True G1932788
TU2210906 lncRNA downstream 12370 41538549 ~ 41538843 (+) True G1932793
TU2210941 lncRNA downstream 96407 41622586 ~ 41624446 (+) True G1932821
TU2210973 lncRNA downstream 104992 41631171 ~ 41631852 (+) True G1932851
TU2210980 lncRNA downstream 109822 41636001 ~ 41636201 (+) True G1932858
XM_036961569.1 mRNA upstream 258636 41266767 ~ 41267279 (+) True LOC118944044
XM_036961527.1 mRNA upstream 400537 41012678 ~ 41125378 (+) False si
XM_036961525.1 mRNA upstream 400537 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA upstream 400537 41029792 ~ 41125378 (+) True si
XM_021581569.2 mRNA upstream 553536 40962699 ~ 40972379 (+) True LOC110503202
XM_036961130.1 mRNA downstream 497303 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 613890 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 613890 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 613890 42140069 ~ 42335470 (+) False LOC110503413
XM_036961682.1 mRNA downstream 1197352 42723531 ~ 42785160 (+) True prdm10
TU2210655 other upstream 187727 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 408503 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 964009 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 1420383 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 1447583 40076476 ~ 40078332 (+) True G1929909
TU2211289 other downstream 768669 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 835077 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 863248 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 969401 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 1005539 42531718 ~ 42534983 (+) False G1933574

Expression Profile