RNA id: TU2210951


Basic Information

Item Value
RNA id TU2210951
length 1438
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1932830
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41574344 ~ 41624439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctatttcttgaactgcattgttggttaaagggcttgtaagtaatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacaccttttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtgaggtctactacacctgttatattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgagatctactacacctgttgtattcagcatttcactgtgagatctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtgaggtctactacacctgttgtagtcagcatttgactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtgaggtctactacacctgttgtattcagcatttcattttcggcgcatgtgacaaatatcatttgatttgggtgtgtgtgttcgtgcatgtgtgtatgagtgagagaaagagtgcaagtgtgtgtgtgtctgtgtttctatgtgtgtgtgtgagagagagagtgtgagtgtgtctgtgtgtgtttgtattggtgagagagagcaagacggtgtttgtatatgagagagagagagagagagagagagagagagactgtagagagagagagagagagagactgtagagagagagataggatggagagagagagagagagagaggatggagagagagagagagagggactgtagagagagagaaagagataggatggagagagagagagggtggagaaaaaGTATTGATATTTCCAGCATAAACACTCCTCCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210902 lncRNA downstream 45424 41528618 ~ 41528920 (-) True G1932789
TU2210897 lncRNA downstream 49145 41524892 ~ 41525199 (-) True G1932785
TU2210892 lncRNA downstream 54767 41519240 ~ 41519577 (-) True G1932780
TU2210891 lncRNA downstream 55163 41518930 ~ 41519181 (-) True G1932779
TU2210889 lncRNA downstream 62110 41512024 ~ 41512234 (-) True G1932777
TU2210982 lncRNA upstream 20201 41644640 ~ 41644946 (-) True G1932860
TU2210983 lncRNA upstream 20655 41645094 ~ 41645406 (-) True G1932861
TU2211018 lncRNA upstream 46132 41670571 ~ 41671198 (-) True G1932895
TU2211030 lncRNA upstream 51708 41676147 ~ 41678828 (-) True G1932906
TU2211043 lncRNA upstream 69531 41693970 ~ 41694282 (-) True G1932917
XM_036961570.1 mRNA downstream 198636 41362542 ~ 41375708 (-) True LOC118944045
XM_036961568.1 mRNA downstream 1193864 40370210 ~ 40380480 (-) False LOC118944043
XM_036961991.1 mRNA downstream 1452439 40027973 ~ 40121905 (-) False LOC110503403
XM_036961988.1 mRNA downstream 1452441 40027973 ~ 40121903 (-) False LOC110503403
XM_036961989.1 mRNA downstream 1452447 40027973 ~ 40121897 (-) False LOC110503403
XM_036961521.1 mRNA upstream 152517 41776956 ~ 41865547 (-) False zbbx
XM_036961523.1 mRNA upstream 152517 41776956 ~ 41865547 (-) True zbbx
XM_036961134.1 mRNA upstream 364284 41988723 ~ 42023198 (-) False LOC118944009
XM_036961131.1 mRNA upstream 385839 42010278 ~ 42023232 (-) False LOC118944009
XM_036961132.1 mRNA upstream 385839 42010278 ~ 42023238 (-) False LOC118944009
TU2210500 other downstream 417611 41156371 ~ 41156733 (-) True G1932422
TU2209757 other downstream 1108477 40465620 ~ 40465867 (-) True G1931785
TU2208958 other downstream 2223705 39331834 ~ 39350639 (-) True G1931133
TU2208702 other downstream 2487341 39085575 ~ 39087003 (-) True dhx34
TU2208705 other downstream 2499211 39074316 ~ 39075133 (-) False dhx34
TU2211565 other upstream 364398 41988837 ~ 42003428 (-) True LOC118944009
TU2211644 other upstream 448688 42073127 ~ 42075939 (-) True G1933401
TU2211802 other upstream 775458 42399897 ~ 42400327 (-) True G1933529
TU2212458 other upstream 1495526 43119965 ~ 43153967 (-) True G1934061
TU2212512 other upstream 1574934 43199373 ~ 43199815 (-) True G1934102

Expression Profile