RNA id: TU2211434


Basic Information

Item Value
RNA id TU2211434
length 217
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G1933237
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42350418 ~ 42350634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacgcatcactgggggtaactgctccgcccacaaccgtaaggctctccagagggtagtgaggtctgcccaacgcatcaccgggggcacactgcctgccctccaggacatctatagcacccgatgtcacaggaaggccaaaaagatcattaaggacaacaaccactcgagccactgcctgttcaccccgctgtcatccagaaggcgaggtcagtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211397 lncRNA upstream 1845 42291838 ~ 42348573 (+) True G1933202
TU2211287 lncRNA upstream 15224 42333890 ~ 42335194 (+) True LOC110503413
TU2211419 lncRNA upstream 23175 42326776 ~ 42327243 (+) True G1933224
TU2211369 lncRNA upstream 123814 42224698 ~ 42226604 (+) True G1933175
TU2211323 lncRNA upstream 157452 42190649 ~ 42192966 (+) True G1933136
TU2211436 lncRNA downstream 3792 42354426 ~ 42354686 (+) True G1933239
TU2211431 lncRNA downstream 7028 42357662 ~ 42357869 (+) True G1933234
TU2211429 lncRNA downstream 19182 42369816 ~ 42370459 (+) True G1933232
TU2211439 lncRNA downstream 20814 42371448 ~ 42371726 (+) True G1933242
TU2211445 lncRNA downstream 28493 42379127 ~ 42379403 (+) True G1933248
XM_036962011.1 mRNA upstream 14948 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 16961 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 110079 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 271688 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1083139 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 372897 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 715653 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 715653 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 948894 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 948895 43299529 ~ 43420475 (+) False bcl9l
TU2211289 other upstream 15224 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1012230 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1233006 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 1788512 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 2244886 40089400 ~ 40105532 (+) False G1929916
TU2211428 other downstream 10622 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 38793 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 144946 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 181084 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 181084 42531718 ~ 42534983 (+) True G1933574

Expression Profile