RNA id: TU2211436


Basic Information

Item Value
RNA id TU2211436
length 261
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1933239
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42354426 ~ 42354686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGgggtgaaatagagagagaatagaggaacagAGGGTGAAAAAGTAAGAGAATGGGACCAAATCCTACTACCCTGGCCTGCAGTGACCACAACATCCTCACTTCAGGAGCAACAGAATATCAAGCTAGTCCTGCCCTCTTGTGGTGAAACATAACACATGCTCATCAGAACACTATTGACATAAACTAAATTACACAATCCGCAATCTGTGATCAATAACATATAGACCAACCTCTGTTTAACCTAGTTAACCcagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211434 lncRNA upstream 3792 42350418 ~ 42350634 (+) True G1933237
TU2211397 lncRNA upstream 5853 42291838 ~ 42348573 (+) True G1933202
TU2211287 lncRNA upstream 19232 42333890 ~ 42335194 (+) True LOC110503413
TU2211419 lncRNA upstream 27183 42326776 ~ 42327243 (+) True G1933224
TU2211369 lncRNA upstream 127822 42224698 ~ 42226604 (+) True G1933175
TU2211431 lncRNA downstream 2976 42357662 ~ 42357869 (+) True G1933234
TU2211429 lncRNA downstream 15130 42369816 ~ 42370459 (+) True G1933232
TU2211439 lncRNA downstream 16762 42371448 ~ 42371726 (+) True G1933242
TU2211445 lncRNA downstream 24441 42379127 ~ 42379403 (+) True G1933248
TU2211449 lncRNA downstream 31616 42386302 ~ 42386554 (+) True G1933252
XM_036962011.1 mRNA upstream 18956 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 20969 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 114087 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 275696 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1087147 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 368845 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 711601 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 711601 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 944842 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 944843 43299529 ~ 43420475 (+) False bcl9l
TU2211289 other upstream 19232 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1016238 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1237014 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 1792520 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 2248894 40089400 ~ 40105532 (+) False G1929916
TU2211428 other downstream 6570 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 34741 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 140894 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 177032 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 177032 42531718 ~ 42534983 (+) True G1933574

Expression Profile