RNA id: TCONS_00057140


Basic Information

Item Value
RNA id TCONS_00057140
length 463
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id XLOC_027237
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16037168 ~ 16073706 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAATTTTATCATTCCTgccaaaaaaaaggtattttttccaaaaaaaaaaaggatttttttccTCTTCCGCTGCACCTTTCTCTCCTCCTCTCTGGTCAGCCTCTCTTATCTCCACTCCGCCTCTCTCTTCTCTGGTCCGCCCATCTGTCATCTTAGTCCAGCCTTCCTCACTCATGTCTGTCTTATCACGCCGGGTGTGTCCGCCATTCTCATTTGTGTTACCGCCCCAGGTGAACTTGTGCTCTGGTCCGTGTTTTCACTTCATGCTCCAGTCCGTGTTTCACAGTGTGCTTAGTTCCCCTTGAGCTTCAGGTACTTGCCCTCATGTTTTGCCTTACCGCCCCAGGTAGGTTCTtaggtgggattcgaacccatgtTTCGACCGTCACCTTGTCCGCAACCAACGGTGTTTAGCCACTAGTGCCATCGTAGCTTACACGCTGAGAGATGGAGTTTGGCGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057686 lncRNA upstream 20368 16019026 ~ 16023375 (+) False XLOC_027236
TCONS_00057699 lncRNA downstream 119142 16190326 ~ 16211867 (+) False XLOC_027238
TCONS_00057698 lncRNA downstream 119142 16190326 ~ 16211867 (+) False XLOC_027238
TCONS_00057700 lncRNA downstream 121851 16193035 ~ 16211867 (+) True XLOC_027238
TCONS_00057701 lncRNA downstream 237892 16309076 ~ 16313899 (+) True XLOC_027239
TCONS_00057141 lncRNA downstream 303085 16374269 ~ 16374692 (+) True XLOC_027242
TCONS_00053645 mRNA upstream 47552 15983541 ~ 15996191 (+) False XLOC_027234
TCONS_00053644 mRNA upstream 62204 15981096 ~ 15981539 (+) True XLOC_027233
TCONS_00053643 mRNA upstream 68833 15968483 ~ 15974910 (+) True XLOC_027232
TCONS_00053642 mRNA upstream 79713 15954293 ~ 15964030 (+) True XLOC_027229
TCONS_00053641 mRNA upstream 98876 15944245 ~ 15944867 (+) True XLOC_027231
TCONS_00053654 mRNA downstream 244508 16315692 ~ 16319762 (+) True XLOC_027240
TCONS_00053655 mRNA downstream 252786 16323970 ~ 16347126 (+) True XLOC_027241
TCONS_00053656 mRNA downstream 638817 16710001 ~ 16725063 (+) False XLOC_027244
TCONS_00053657 mRNA downstream 644083 16715267 ~ 16725144 (+) True XLOC_027244
TCONS_00053658 mRNA downstream 654776 16725960 ~ 16742893 (+) True XLOC_027245
TCONS_00053646 other upstream 52653 15988387 ~ 15991090 (+) True XLOC_027234
TCONS_00053633 other upstream 823076 15219244 ~ 15220667 (+) True XLOC_027225
TCONS_00053631 other upstream 968011 15075665 ~ 15075732 (+) True XLOC_027223
TCONS_00053630 other upstream 968919 15074715 ~ 15074824 (+) False XLOC_027223
TCONS_00053629 other upstream 969080 15074566 ~ 15074663 (+) False XLOC_027223
TCONS_00053668 other downstream 827457 16898641 ~ 16904469 (+) True XLOC_027255
TCONS_00053669 other downstream 990796 17061980 ~ 17062097 (+) True XLOC_027258
TCONS_00053686 other downstream 1282556 17353740 ~ 17363070 (+) False XLOC_027263
TCONS_00053689 other downstream 1299502 17370686 ~ 17376220 (+) True XLOC_027263
TCONS_00053700 other downstream 1600447 17671631 ~ 17689325 (+) False XLOC_027272

Expression Profile

//