RNA id: TU2211820


Basic Information

Item Value
RNA id TU2211820
length 363
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1933547
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42451527 ~ 42451889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccagtacagtataaaacacttcactatgttgtaacccagtacagtataaaacacttcactatgttgtaaccccagtataaaacacttcagtatgttgtaacccagtacagtataaaacacttcactatgttgtaaccccagtataaaacacttcactatgttgtaaccccagtataaaacacttcactatgttgtaaccccagtataaaacacttcactatgttgtaacccagtacagtataaaacacttcactatgttgtaaccaagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211818 lncRNA upstream 785 42450327 ~ 42450742 (+) True G1933545
TU2211462 lncRNA upstream 22215 42428987 ~ 42429312 (+) True G1933265
TU2211461 lncRNA upstream 25867 42425425 ~ 42425660 (+) True G1933264
TU2211460 lncRNA upstream 34661 42416665 ~ 42416866 (+) True G1933263
TU2211458 lncRNA upstream 39993 42411333 ~ 42411534 (+) True G1933261
TU2211825 lncRNA downstream 6368 42458257 ~ 42458989 (+) True G1933552
TU2211828 lncRNA downstream 12281 42464170 ~ 42464400 (+) True G1933555
TU2211829 lncRNA downstream 14763 42466652 ~ 42467135 (+) True G1933556
TU2211830 lncRNA downstream 15495 42467384 ~ 42468352 (+) True G1933557
TU2211832 lncRNA downstream 37521 42489410 ~ 42489999 (+) True G1933559
XM_036962011.1 mRNA upstream 116057 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 118070 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 211188 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 372797 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1184248 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 271642 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 614398 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 614398 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 847639 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 847640 43299529 ~ 43420475 (+) False bcl9l
TU2211452 other upstream 61266 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 86267 42361256 ~ 42365260 (+) True G1933231
TU2211289 other upstream 116333 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1113339 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1334115 41114637 ~ 41117412 (+) True G1932319
TU2211839 other downstream 43691 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 79829 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 79829 42531718 ~ 42534983 (+) True G1933574
TU2212382 other downstream 706214 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 981559 43433448 ~ 43435352 (+) True G1934201

Expression Profile