RNA id: TU2211828


Basic Information

Item Value
RNA id TU2211828
length 231
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1933555
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42464170 ~ 42464400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacgtcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtacagtataaaacacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211825 lncRNA upstream 5181 42458257 ~ 42458989 (+) True G1933552
TU2211820 lncRNA upstream 12281 42451527 ~ 42451889 (+) True G1933547
TU2211818 lncRNA upstream 13428 42450327 ~ 42450742 (+) True G1933545
TU2211462 lncRNA upstream 34858 42428987 ~ 42429312 (+) True G1933265
TU2211461 lncRNA upstream 38510 42425425 ~ 42425660 (+) True G1933264
TU2211829 lncRNA downstream 2252 42466652 ~ 42467135 (+) True G1933556
TU2211830 lncRNA downstream 2984 42467384 ~ 42468352 (+) True G1933557
TU2211832 lncRNA downstream 25010 42489410 ~ 42489999 (+) True G1933559
TU2211872 lncRNA downstream 81156 42545556 ~ 42546643 (+) True G1933578
TU2211888 lncRNA downstream 109094 42573494 ~ 42573783 (+) True G1933591
XM_036962011.1 mRNA upstream 128700 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 130713 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 223831 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 385440 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1196891 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 259131 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 601887 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 601887 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 835128 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 835129 43299529 ~ 43420475 (+) False bcl9l
TU2211452 other upstream 73909 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 98910 42361256 ~ 42365260 (+) True G1933231
TU2211289 other upstream 128976 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1125982 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1346758 41114637 ~ 41117412 (+) True G1932319
TU2211839 other downstream 31180 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 67318 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 67318 42531718 ~ 42534983 (+) True G1933574
TU2212382 other downstream 693703 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 969048 43433448 ~ 43435352 (+) True G1934201

Expression Profile