RNA id: TU2211832


Basic Information

Item Value
RNA id TU2211832
length 590
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1933559
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42489410 ~ 42489999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtacaaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtacagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaaccccagtacagtataaaacacttcactatgttgtaacccagtacagtataaaacacttcactatgctgtaaccccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtacagtataaaacacttcactatgttgtaaccccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacccagtataaaacacttcactatgttgtaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211830 lncRNA upstream 21058 42467384 ~ 42468352 (+) True G1933557
TU2211829 lncRNA upstream 22275 42466652 ~ 42467135 (+) True G1933556
TU2211828 lncRNA upstream 25010 42464170 ~ 42464400 (+) True G1933555
TU2211825 lncRNA upstream 30421 42458257 ~ 42458989 (+) True G1933552
TU2211820 lncRNA upstream 37521 42451527 ~ 42451889 (+) True G1933547
TU2211872 lncRNA downstream 55557 42545556 ~ 42546643 (+) True G1933578
TU2211888 lncRNA downstream 83495 42573494 ~ 42573783 (+) True G1933591
TU2211896 lncRNA downstream 103466 42593465 ~ 42595799 (+) False G1933598
TU2211897 lncRNA downstream 103466 42593465 ~ 42595799 (+) False G1933598
TU2211899 lncRNA downstream 103466 42593465 ~ 42595157 (+) False G1933598
XM_036962011.1 mRNA upstream 153940 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 155953 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 249071 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 410680 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1222131 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 233532 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 576288 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 576288 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 809529 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 809530 43299529 ~ 43420475 (+) False bcl9l
TU2211452 other upstream 99149 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 124150 42361256 ~ 42365260 (+) True G1933231
TU2211289 other upstream 154216 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1151222 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1371998 41114637 ~ 41117412 (+) True G1932319
TU2211839 other downstream 5581 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 41719 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 41719 42531718 ~ 42534983 (+) True G1933574
TU2212382 other downstream 668104 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 943449 43433448 ~ 43435352 (+) True G1934201

Expression Profile