RNA id: TU2211921


Basic Information

Item Value
RNA id TU2211921
length 716
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1933615
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42644848 ~ 42647255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgcgtctctgtgtgtgcgtctctgtgtgtgcgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtttctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgtgtgtgtgtgtgtttctgtgtgtgtgtttctgtgtttctgtgtgtgtgtttctgtgtgtgtctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtttctgtgtgtgtctgtgtgtgtgtgtgtttctgtgtttctgtgtgtgtgtgtgtgtgtttctgtgtgtgtgtttctgtgtgtgtgtttctgtgtgtgtgtgtgtgtgtttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211917 lncRNA upstream 7576 42636832 ~ 42637272 (+) True G1933613
TU2211911 lncRNA upstream 26267 42617294 ~ 42618581 (+) True G1933607
TU2211896 lncRNA upstream 49049 42593465 ~ 42595799 (+) False G1933598
TU2211942 lncRNA downstream 29524 42676779 ~ 42677664 (+) False G1933631
TU2211943 lncRNA downstream 29782 42677037 ~ 42677664 (+) True G1933631
TU2211944 lncRNA downstream 34919 42682174 ~ 42683022 (+) True G1933632
TU2211950 lncRNA downstream 44091 42691346 ~ 42691546 (+) True G1933637
TU2211958 lncRNA downstream 71660 42718915 ~ 42719143 (+) True G1933645
XM_036962011.1 mRNA upstream 309378 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 311391 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 404509 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 566118 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1377569 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 76276 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 419032 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 419032 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 652273 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 652274 43299529 ~ 43420475 (+) False bcl9l
TU2211865 other upstream 109865 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 109865 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 143858 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 254587 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 279588 42361256 ~ 42365260 (+) True G1933231
TU2212382 other downstream 510848 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 786193 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 2453047 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 2454869 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 2456877 45104132 ~ 45104500 (+) True G1935696

Expression Profile