RNA id: TU2212175


Basic Information

Item Value
RNA id TU2212175
length 1178
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G1933815
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42689330 ~ 42690651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatagttctcctcaccagggcatgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcataCTGAGGGACAgctctcctcaccagggcctgcttgTGCTGAATaggactgagggatagttctcctcaccagggcctgggcctcctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgtgcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcacgagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgcttatactgaatcagactgagggatagttctcctcaccagggccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggtctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagatgtTGGAAGTTCTGTATACTTTTCAGTACTCTAAATGTCCTGTTCCTACTCCTCACCGCTGCCCCTCACTCCTTCATCCACCACAGGgtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212174 lncRNA downstream 2498 42686622 ~ 42686832 (-) True G1933814
TU2212168 lncRNA downstream 11515 42677021 ~ 42677815 (-) True G1933810
TU2212167 lncRNA downstream 11781 42676666 ~ 42677549 (-) False G1933810
TU2212165 lncRNA downstream 12728 42676092 ~ 42676602 (-) True G1933809
TU2212152 lncRNA downstream 50848 42638133 ~ 42638482 (-) False G1933799
TU2212179 lncRNA upstream 15435 42706086 ~ 42712481 (-) True G1933819
TU2212181 lncRNA upstream 22126 42712777 ~ 42713126 (-) True G1933821
TU2212182 lncRNA upstream 22581 42713232 ~ 42714231 (-) True G1933822
TU2212183 lncRNA upstream 23691 42714342 ~ 42716769 (-) True G1933823
TU2212184 lncRNA upstream 27708 42718359 ~ 42718611 (-) True G1933824
XM_036961449.1 mRNA downstream 15547 42532534 ~ 42673783 (-) False aplp2
XM_036961868.1 mRNA upstream 528423 43219074 ~ 43223984 (-) True LOC118944083
XM_036962030.1 mRNA upstream 743475 43434126 ~ 43439279 (-) False LOC110503290
XM_036962032.1 mRNA upstream 743475 43434126 ~ 43439279 (-) True LOC110503290
XM_036961571.1 mRNA upstream 811650 43502301 ~ 43504650 (-) True LOC118944046
XM_036961572.1 mRNA upstream 958755 43649406 ~ 43650309 (-) True LOC118944047
TU2211802 other downstream 289003 42399897 ~ 42400327 (-) True G1933529
TU2211644 other downstream 613391 42073127 ~ 42075939 (-) True G1933401
TU2211565 other downstream 685902 41988837 ~ 42003428 (-) True LOC118944009
TU2210500 other downstream 1532597 41156371 ~ 41156733 (-) True G1932422
TU2209757 other downstream 2223463 40465620 ~ 40465867 (-) True G1931785
TU2212458 other upstream 429314 43119965 ~ 43153967 (-) True G1934061
TU2212512 other upstream 508722 43199373 ~ 43199815 (-) True G1934102
TU2214020 other upstream 1566645 44257296 ~ 44258661 (-) True G1935283
TU2214166 other upstream 1830504 44521155 ~ 44521439 (-) True G1935421
TU2214215 other upstream 1888371 44579022 ~ 44585392 (-) False G1935467

Expression Profile