RNA id: TU2212183


Basic Information

Item Value
RNA id TU2212183
length 1944
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G1933823
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42714342 ~ 42716769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatagttctcctcaccagggccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatattgaatcagactgagggatagttctcctcaccatggcctgggcctgctgatactgaatcagactgatgtatagttctcctcaccagggcctgcttatactgaatcagactgtgggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctacTGATACTGAaacagactgagggatagttctcctcaccagggcctgtttatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggccagggccagtttatactgaatcagactgagggatagttctcctcaccagggccagggccagtttatactgaatcagactgagggatagttctcctcaccagggcctgggccagcttatactgaatcaggctgagggatagttctcctcaccagggccagggcctgtttatactgaatcagactgacagacagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgttactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctccacaacagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgcttatactgaatcaggctgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggccatcttatactgaatcagactgagggatagttctcctcaccagggccagggccagtttatactgaatcagactgagggatagttctcctcaccagggcctgggcctgcttatactgaatcaggctgagggatagttctcctcaccagggcctgcttatactgaatcagactgaggtatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgcttatactgaaacaggctgagggatagttctcctcaccagggcctgcttatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgttactgaatcagactgagggatagttctcctcacctgtgcctgggcctgctgatactgaatcagactgtgggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgcttatactgaatcagactgagggatagttctcctcaccagggccagggccagtttatactgaatcagactgagggatagttctcctcaccagggccagggccagtttatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctacTGATACTGAaacagactgagggatagttctcctcaccagggcctgctgatactgaatcagactgagggatagttctcctcaccagggcctgctgatactgaatcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212182 lncRNA downstream 111 42713232 ~ 42714231 (-) True G1933822
TU2212181 lncRNA downstream 1216 42712777 ~ 42713126 (-) True G1933821
TU2212179 lncRNA downstream 1861 42706086 ~ 42712481 (-) True G1933819
TU2212175 lncRNA downstream 23691 42689330 ~ 42690651 (-) True G1933815
TU2212174 lncRNA downstream 27510 42686622 ~ 42686832 (-) True G1933814
TU2212184 lncRNA upstream 1590 42718359 ~ 42718611 (-) True G1933824
TU2212185 lncRNA upstream 3176 42719945 ~ 42720149 (-) True G1933825
TU2212211 lncRNA upstream 37505 42754274 ~ 42863689 (-) True G1933849
TU2212216 lncRNA upstream 45332 42762101 ~ 42762628 (-) True G1933854
TU2212219 lncRNA upstream 46771 42763540 ~ 42764311 (-) True G1933856
XM_036961449.1 mRNA downstream 40559 42532534 ~ 42673783 (-) False aplp2
XM_036961868.1 mRNA upstream 502305 43219074 ~ 43223984 (-) True LOC118944083
XM_036962030.1 mRNA upstream 717357 43434126 ~ 43439279 (-) False LOC110503290
XM_036962032.1 mRNA upstream 717357 43434126 ~ 43439279 (-) True LOC110503290
XM_036961571.1 mRNA upstream 785532 43502301 ~ 43504650 (-) True LOC118944046
XM_036961572.1 mRNA upstream 932637 43649406 ~ 43650309 (-) True LOC118944047
TU2211802 other downstream 314015 42399897 ~ 42400327 (-) True G1933529
TU2211644 other downstream 638403 42073127 ~ 42075939 (-) True G1933401
TU2211565 other downstream 710914 41988837 ~ 42003428 (-) True LOC118944009
TU2210500 other downstream 1557609 41156371 ~ 41156733 (-) True G1932422
TU2209757 other downstream 2248475 40465620 ~ 40465867 (-) True G1931785
TU2212458 other upstream 403196 43119965 ~ 43153967 (-) True G1934061
TU2212512 other upstream 482604 43199373 ~ 43199815 (-) True G1934102
TU2214020 other upstream 1540527 44257296 ~ 44258661 (-) True G1935283
TU2214166 other upstream 1804386 44521155 ~ 44521439 (-) True G1935421
TU2214215 other upstream 1862253 44579022 ~ 44585392 (-) False G1935467

Expression Profile